Plant FIBer expression Database

Lus10014863 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37460 161 / 4e-46 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001406
[exp]
195 / 6e-58 AT4G37460 1271 / 0.0 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G052200
[exp]
160 / 1e-45 AT4G37460 1333 / 0.0 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10014863 pacid=23142393 polypeptide=Lus10014863 locus=Lus10014863.g ID=Lus10014863.BGIv1.0 annot-version=v1.0
ATGCAGGAATATTGGTGCAAAAGATTGCATCCAAAGAATGTCTGCGAAAAGGTATACAGACAACCTCCTTTGCGTGAGTCTTTAAAGAGGGGTAAACTTA
GAAAGCAGGAGTTTGCTATTTCGAAGCCAAAAGCTGTTTTCCTGGCGGCTGCAGATTCAATTGGCAAAAACATCCAGTATGACTGTCCTGGCTTCCTGCC
TAATAGGCGTCAGAATGGCAAGAGACCTAGGAGAAGGATCAATTTGGCCAGTCAAAATAGAGGTGGTGCTGGTTGTAGCACGAGCAGTGGCTCAGAAACA
TCATCCTCGTATAGCATTACTGAGGATAGATCATCTGCACGTTACATGTTGTCATGGCATTATCTTTATTCCTTGGCTGTTCGATGGAGGCAGATTTCTG
AACCCTGTGATCCAGTTGTATGGATTGACAAGCTAAGGTTTGCTCTTTTTGCTGCTGGTTGTACTTCTCCAGTTCTTCTGAAGTGCACCAACCACATAGC
CTATGCTTAA
AA sequence
>Lus10014863 pacid=23142393 polypeptide=Lus10014863 locus=Lus10014863.g ID=Lus10014863.BGIv1.0 annot-version=v1.0
MQEYWCKRLHPKNVCEKVYRQPPLRESLKRGKLRKQEFAISKPKAVFLAAADSIGKNIQYDCPGFLPNRRQNGKRPRRRINLASQNRGGAGCSTSSGSET
SSSYSITEDRSSARYMLSWHYLYSLAVRWRQISEPCDPVVWIDKLRFALFAAGCTSPVLLKCTNHIAYA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G37460 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetr... Lus10014863
[exp]
0 1
AT5G02250 ATMTRNASEII, RN... ribonucleotide reductase 1, EM... Lus10010842
[exp]
1.0 0.9211
AT3G22470 Pentatricopeptide repeat (PPR)... Lus10003426
[exp]
1.4 0.8979
AT2G45880 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7... Lus10017819
[exp]
2.0 0.8697
Lus10042563
[exp]
2.4 0.8828
AT4G24470 GATA GATA25, TIFY1, ... Zinc-finger protein expressed ... Lus10042865
[exp]
3.5 0.8678
AT2G21090 Pentatricopeptide repeat (PPR-... Lus10019213
[exp]
3.9 0.8691
AT2G32760 unknown protein Lus10022575
[exp]
4.4 0.8164
AT3G01460 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.... Lus10030624
[exp]
4.6 0.8127
AT2G25660 EMB2410 embryo defective 2410 (.1) Lus10022111
[exp]
5.9 0.8559
Lus10016908
[exp]
6.0 0.8226

Lus10014863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.