Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59670 115 / 1e-27 unknown protein AT4G37440 111 / 3e-26 unknown protein AT3G50040 97 / 1e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001409 [exp] 754 / 0 AT4G37440 155 / 2e-42 unknown protein Lus10011519 [exp] 209 / 7e-63 AT4G37440 134 / 8e-35 unknown protein Lus10027104 [exp] 103 / 8e-24 AT3G59670 244 / 1e-75 unknown protein Lus10008349 [exp] 100 / 2e-22 AT3G59670 277 / 1e-86 unknown protein Lus10019305 [exp] 90 / 5e-20 AT4G37440 83 / 4e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G051100 [exp] 242 / 1e-74 AT3G59670 178 / 4e-50 unknown protein Potri.005G144800 [exp] 221 / 2e-66 AT3G59670 181 / 6e-51 unknown protein Potri.013G127100 [exp] 157 / 4e-42 AT3G59670 377 / 2e-125 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014864 pacid=23142417 polypeptide=Lus10014864 locus=Lus10014864.g ID=Lus10014864.BGIv1.0 annot-version=v1.0 ATGGATCATGAGGTGGAGCTGGATGGTAAAATGAAGGAAATGAAAGGCTTGCCTCAGAAAGAGTTTCAAAGTCATCCCCAGTATGGCAATGGAAAAATAG TGCCTCCCACAGGCAATGTAGTTTCTAAAGAATCTCTGGCTGACACCAAATCTGGGGTACCGCACAAAGCTGAGGATTTGGACGTTAATATAGTTGATTG TATCAATTCTCCTGAAGTTCATAGATTTGAAACTGAAAATGATAACACTGCTGAGAGCATGAGTTCATTCAGTGGGGCAGTGTCTGAGACGGAAAGTGGC TTGATGTTGGGTGATACTGAGGTTGATTCACATGTGCACGGTGGTCACATGGCACCTTCATTGTTTAACGGATGTGGAGGAGCATTACAAACTAGGAGGA GAAGGTTGACTGAACATTGGAGGAGATTCATACATCCTCTAATGTGGCGCTGCAAATGGGTAGAATTGCGGCTCAAAGAATTTCAGTCACAGGCAGTGAA GTATGAGAGAGAGTTTGCAGAAATTGAACAAAGAAAGAAGTTCGATAACGAGTTATTAATGGCAGAAGGTTTTGAGGGGAAGTCAAAACCCTATTCTTGG TCTCTCCCAAGGAAGAAGGCCATGAAGAGAAAGAAAAGAAAGAGATTTGAAGAGATGAATGATATGGCATCATATACGTTGCAGCATAACCTGCTCTCTT ATTATGAAATTAAGAAGGCAGCCAATGATGGTGCTACCATGGACGTTGATCTCTCTCTGCTAGATAGGAAAATTACGGGTGACGACAAGTCCGAATTTCG GGATGGATGGACATCACTCCATTCAGAAGACTCCAATAGCAGGGATGAAAAAGTTCTTATGAAAATTGCAGTTTTACAATCCCGGGTCCGTAAGTTGAGG TCCCGACTTGATGTTGTGGTGAGGGAAAATCCCGGAAAGTTCTCCTATGTTCCTAGCTCTTTTCCTGAACCATCAGATGTGTTGGCCAGTACTGGAACTG AGAATGGAGAGAGAGCTCTTAGTTCATTACAACCTTTATCCCACCCTGGTTCTGAGCATCAATTGGAAGGTCTTATGCCTGAAAGTGCGGTTTCAAATCG TGAGCCCAACATGACTGACAGCAAAGATGGACCTTCTGCTAGTGCTCATGAAATTAAGAAGGAAGAGGTTGCTACTCATCATCACCCAGCTGGGGAGGAA ATGCCAGTGGTGGAGAATCAGAGTCAGCCGGAGGAGAAGCCTCAGTTAGCGATGGAAAAGGAGAAAGGGAATCAGACCCCCAGTAATCCACAATCCCAAG CAAAGACACCATTGTTGCAGACGCAATACCCTGGTAAATCGCTTCCAAAATCCCGGTCTAGGCCTACTAGCAACAAGCAAAAAAGGGGAAAGAGGAGGTC TGGAGCAAGTGGATGGAGTCGCAGAGCTTGA
AA sequence Show only first row Show all	>Lus10014864 pacid=23142417 polypeptide=Lus10014864 locus=Lus10014864.g ID=Lus10014864.BGIv1.0 annot-version=v1.0 MDHEVELDGKMKEMKGLPQKEFQSHPQYGNGKIVPPTGNVVSKESLADTKSGVPHKAEDLDVNIVDCINSPEVHRFETENDNTAESMSSFSGAVSETESG LMLGDTEVDSHVHGGHMAPSLFNGCGGALQTRRRRLTEHWRRFIHPLMWRCKWVELRLKEFQSQAVKYEREFAEIEQRKKFDNELLMAEGFEGKSKPYSW SLPRKKAMKRKKRKRFEEMNDMASYTLQHNLLSYYEIKKAANDGATMDVDLSLLDRKITGDDKSEFRDGWTSLHSEDSNSRDEKVLMKIAVLQSRVRKLR SRLDVVVRENPGKFSYVPSSFPEPSDVLASTGTENGERALSSLQPLSHPGSEHQLEGLMPESAVSNREPNMTDSKDGPSASAHEIKKEEVATHHHPAGEE MPVVENQSQPEEKPQLAMEKEKGNQTPSNPQSQAKTPLLQTQYPGKSLPKSRSRPTSNKQKRGKRRSGASGWSRRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37440			unknown protein		Lus10014864 [exp]	0	1
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10041396 [exp]	1.4	0.8774
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10020523 [exp]	3.0	0.8682
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10002383 [exp]	3.5	0.8688
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10020435 [exp]	3.7	0.8452
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10020513 [exp]	4.9	0.8208
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10005372 [exp]	5.3	0.8544
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10041132 [exp]	7.3	0.8377
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Lus10015481 [exp]	7.7	0.8476
AT1G21760		ATFBP7	F-box protein 7 (.1)		Lus10029676 [exp]	8.8	0.8264
AT3G60300			RWD domain-containing protein ...		Lus10024759 [exp]	9.2	0.8189

Compare expression of checked genes

Lus10014864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.