Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37390 853 / 0 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT2G14960 851 / 0 GH3.1 Auxin-responsive GH3 family protein (.1) AT2G23170 830 / 0 GH3.3 Auxin-responsive GH3 family protein (.1) AT1G59500 798 / 0 GH3.4 Auxin-responsive GH3 family protein (.1) AT5G54510 734 / 0 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) AT4G27260 729 / 0 GH3.5, WES1 Auxin-responsive GH3 family protein (.1) AT1G28130 609 / 0 GH3.17 Auxin-responsive GH3 family protein (.1.2) AT2G47750 560 / 0 GH3.9 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) AT1G23160 530 / 0 Auxin-responsive GH3 family protein (.1) AT5G13320 503 / 3e-173 WIN3, GDG1, PBS3, GH3.12 HOPW1-1-INTERACTING 3, AVRPPHB SUSCEPTIBLE 3, GRETCHEN HAGEN 3.12, GH3-LIKE DEFENSE GENE 1, Auxin-responsive GH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010391 [exp] 1127 / 0 AT4G37390 904 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10026600 [exp] 935 / 0 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10013887 [exp] 935 / 0 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10014804 [exp] 712 / 0 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10003598 [exp] 707 / 0 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10039723 [exp] 644 / 0 AT5G54510 855 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10018510 [exp] 642 / 0 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10005151 [exp] 370 / 1e-121 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10003039 [exp] 366 / 9e-120 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G050300 [exp] 891 / 0 AT2G14960 959 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G298300 [exp] 890 / 0 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.009G092900 [exp] 882 / 0 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G410400 [exp] 725 / 0 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.013G151100 [exp] 724 / 0 AT5G54510 1014 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.011G129700 [exp] 720 / 0 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.001G069000 [exp] 601 / 0 AT1G28130 901 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.002G206400 [exp] 594 / 0 AT2G47750 865 / 0.0 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) Potri.003G161300 [exp] 573 / 0 AT1G28130 910 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.014G095500 [exp] 371 / 1e-121 AT2G46370 790 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF03321 [flax] [poplar] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Lus10014869 pacid=23142426 polypeptide=Lus10014869 locus=Lus10014869.g ID=Lus10014869.BGIv1.0 annot-version=v1.0 ATGGCCGTGGATTCCGCTACACCGTCCCCTCTCGGACCTCCAGCCTGTGAGAAAGACCGTAAGGCCCTCGACTTCATCCAAGACGTCACCAAGAACGCTG ACTCGGTGCAAGAGCGTGTCCTCGCTGAGATACTGCGGAGGAACTCGGAGACCGAGTATCTCCAGAGGTTCCACCTCGACGGTGCTACTGACAGGGAAAC GTTCAAGTCCAAGATCCCCGTCGTCACTTATGAGGATCTTGTCCCAGAGATCCAACGTATCGCAAATGGCGACCGCTCCCCTATCCTTTCTTCCCACCCT ATCTCTGAGTTCCTCACCAGTTCTGGGACTTCTGCTGGGGAAAGGAAACTGATGCCAGCTATTGAAGAGGACTTGGAACGTCGCCAGCTTCTTTACAGCC TTCTCACCCCCGTTATGAACTTATGTGTGCAGGGACTGGACAAAGGAAAGGCGCTATACTTCTACTTTATAAAGGCAGAGTCAAAGACGCCAGGAGGGCT ACCGGCCCGACCGGTTCTAACTAGTTACTACAAGAGCGATATTTTCAAGAATCGACCATACGACCCATACAATGTAATCACCAGCCCAACCGAGGCAATC CTTTGCGTCGACTCCTACCAGAGCATGTACACCCAGATGCTCTGCGGTCTCGTCATGCGCCATGACGTCCTTCGTGTCGGTGCAGTCTTCGCCTCTGGCC TCCTCAAGGCCATCCGCTTCCTCCAGCTCAACTGGGACCACTTAGTCCGGGACATCAGGACCGGTTCCCTAAACCCTAAGGTAACCGACCCTTCCATCCG AAACTGCACCGTTATCCAATCCCTGAAACCAAACCCGGAGCTAGCCGAGTTCATCACCCAGGAGTGCTCCTGCGAGAATTGGGAAGGGATCCTTACCCGA ATCTGGCCTAATACCAAGTACCTTGACGTGATTGTGACTGGAGCCATGGCTCAGTACATTCCAACTCTCGAGTATTACAGCAACGGCTTGCCCATGACTT GCACCATGTACGCCTCGTCCGAGAGCTATTTTGGACTTAACTTGAACCCAATGTGTAAGCCTTCCGAGGTATCCTACACTTTGATGCCAAACATGTGTTA CTACGAGTTCTTGCCACACGATCCTAAAAGATCCGACGACGATGATACTGAGCTGGACCTAGGAGGAGGAGGAGGAAGACGTAATCTGATTGACCTTGCT GACGTGGAGTTAGGGAACGAGTACGAGCTGATCATCACCACCTACTCGGGACTGTGCCGGTACGTGGTAGGTGACATTCTTAAGGTGACAGGGTTCCACA ACGCGGCCCCACAGTTTCGGTTCATCAGGAGGAAGAACGTCCTGCTCAGTATTGACTCGGACAAGACTGACGAGTCTGAGCTGCAGAAAGCTGTGGAGAG CGCGTCCAGGCTGTTGAAGGAGTTTGAGACGCGCGTGGTGGAGTACACCAGCTACGCCGATACAAAGACGATCCCAGGACACTACGTAGTGTTCTGGGAG CTGATGTCGAAGAATGGTTGTTACCCAACGGATGACGTGCTGGAGGCGTGTTGCCTTCGCTTACCGTGGAGTGGGACGTTTGAGGAGCTGATGGATTACG CCATCTCGAGAGGCGCGTCGATTAACCAGTACAAAGTGCCGAGGTGTGTCAGCTTTACTCCCATTATGGAACTGTTGGATGCCAGGGTAGTGTCCAAACA TCTTAGCCCTTCCCTTCCACATTACTCCTGCGAACGAAAGGGCTGA
AA sequence Show only first row Show all	>Lus10014869 pacid=23142426 polypeptide=Lus10014869 locus=Lus10014869.g ID=Lus10014869.BGIv1.0 annot-version=v1.0 MAVDSATPSPLGPPACEKDRKALDFIQDVTKNADSVQERVLAEILRRNSETEYLQRFHLDGATDRETFKSKIPVVTYEDLVPEIQRIANGDRSPILSSHP ISEFLTSSGTSAGERKLMPAIEEDLERRQLLYSLLTPVMNLCVQGLDKGKALYFYFIKAESKTPGGLPARPVLTSYYKSDIFKNRPYDPYNVITSPTEAI LCVDSYQSMYTQMLCGLVMRHDVLRVGAVFASGLLKAIRFLQLNWDHLVRDIRTGSLNPKVTDPSIRNCTVIQSLKPNPELAEFITQECSCENWEGILTR IWPNTKYLDVIVTGAMAQYIPTLEYYSNGLPMTCTMYASSESYFGLNLNPMCKPSEVSYTLMPNMCYYEFLPHDPKRSDDDDTELDLGGGGGRRNLIDLA DVELGNEYELIITTYSGLCRYVVGDILKVTGFHNAAPQFRFIRRKNVLLSIDSDKTDESELQKAVESASRLLKEFETRVVEYTSYADTKTIPGHYVVFWE LMSKNGCYPTDDVLEACCLRLPWSGTFEELMDYAISRGASINQYKVPRCVSFTPIMELLDARVVSKHLSPSLPHYSCERKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10014869 [exp]	0	1
					Lus10030774 [exp]	2.0	0.9559
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008614 [exp]	2.8	0.9412
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10020122 [exp]	3.0	0.9347
					Lus10015147 [exp]	6.2	0.8736
AT3G58880			F-box/RNI-like superfamily pro...		Lus10035669 [exp]	7.7	0.9201
AT5G43190			Galactose oxidase/kelch repeat...		Lus10007740 [exp]	9.3	0.8810
AT5G38200			Class I glutamine amidotransfe...		Lus10016700 [exp]	10.1	0.8991
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026926 [exp]	11.6	0.9162
AT1G11410			S-locus lectin protein kinase ...		Lus10007608 [exp]	11.8	0.8755
AT1G71530			Protein kinase superfamily pro...		Lus10009464 [exp]	12.8	0.8034

Compare expression of checked genes

Lus10014869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.