Gene [FLAX] | FIBexDB

External link

Symbol

Arabidopsis homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT2G26180	243 / 4e-72	IQD6	IQ-domain 6 (.1)
AT1G72670	177 / 2e-48	IQD8	IQ-domain 8 (.1)
AT1G17480	142 / 1e-36	IQD7	IQ-domain 7 (.1)
AT3G22190	114 / 1e-26	IQD5	IQ-domain 5 (.1.2)
AT4G00820	98 / 4e-21	IQD17	IQ-domain 17 (.1)
AT1G01110	94 / 9e-20	IQD18	IQ-domain 18 (.1.2)
AT4G10640	85 / 4e-17	IQD16	IQ-domain 16 (.1)
AT5G03040	85 / 7e-17	IQD2	IQ-domain 2 (.1.2.3)
AT3G52290	79 / 3e-15	IQD3	IQ-domain 3 (.1)
AT3G49260	76 / 3e-14	IQD21	IQ-domain 21 (.1.2.3)

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10013522 [exp]	357 / 3e-114	AT2G26180	403 / 2e-138	IQ-domain 6 (.1)
Lus10013362 [exp]	126 / 9e-31	AT3G22190	338 / 4e-113	IQ-domain 5 (.1.2)
Lus10004107 [exp]	108 / 1e-24	AT3G22190	308 / 6e-101	IQ-domain 5 (.1.2)
Lus10010104 [exp]	90 / 2e-18	AT1G01110	434 / 3e-147	IQ-domain 18 (.1.2)
Lus10012608 [exp]	89 / 4e-18	AT1G01110	432 / 8e-147	IQ-domain 18 (.1.2)
Lus10019916 [exp]	86 / 3e-17	AT5G03040	410 / 9e-141	IQ-domain 2 (.1.2.3)
Lus10026486 [exp]	85 / 9e-17	AT5G03040	414 / 4e-140	IQ-domain 2 (.1.2.3)
Lus10036508 [exp]	84 / 2e-16	AT5G03040	343 / 1e-113	IQ-domain 2 (.1.2.3)
Lus10041419 [exp]	83 / 3e-16	AT5G03040	345 / 2e-115	IQ-domain 2 (.1.2.3)

Poplar homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.006G226600 [exp]	295 / 4e-91	AT2G26180	386 / 1e-131	IQ-domain 6 (.1)
Potri.018G062001 [exp]	284 / 1e-89	AT2G26180	260 / 2e-85	IQ-domain 6 (.1)
Potri.003G042700 [exp]	188 / 7e-52	AT1G72670	223 / 3e-68	IQ-domain 8 (.1)
Potri.001G215200 [exp]	140 / 2e-35	AT3G22190	272 / 4e-87	IQ-domain 5 (.1.2)
Potri.009G015800 [exp]	122 / 3e-29	AT3G22190	286 / 9e-93	IQ-domain 5 (.1.2)
Potri.002G178500 [exp]	100 / 9e-22	AT4G00820	458 / 1e-156	IQ-domain 17 (.1)
Potri.014G104600 [exp]	96 / 4e-20	AT4G00820	432 / 2e-146	IQ-domain 17 (.1)
Potri.006G131100 [exp]	89 / 3e-18	AT5G03040	369 / 1e-123	IQ-domain 2 (.1.2.3)
Potri.011G153400 [exp]	88 / 9e-18	AT4G00820	331 / 3e-107	IQ-domain 17 (.1)
Potri.012G022500 [exp]	84 / 1e-16	AT1G01110	242 / 2e-73	IQ-domain 18 (.1.2)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0220 [flax] [poplar]	EF_hand	PF00612 [flax] [poplar]	IQ	IQ calmodulin-binding motif

Representative CDS sequence

Show only first row Show all

>Lus10014870 pacid=23142438 polypeptide=Lus10014870 locus=Lus10014870.g ID=Lus10014870.BGIv1.0 annot-version=v1.0

ATGGGTGCACCAGCAAAATGGGTCAAATCCATTATGGGTTTGAACAAGTCTGACGCCATTAATGAGAAGATTAACGGTGGAAAAGGTAAAAAATGTAAGC

TTTGGAGGAGCTCCTCTGGAGAAATGCCTTCTTCCTGGAAAGGCTTCAAAGGAAGAAACATGTCAGCTTCAGATTGCTCTGGTTGTTCCCCGAAATCAGA

CCCTTTCAGTTCTGCAATGGCAACTTTGGTTCGAGCTCCTCCCAAGGATTTCAGGATTGTAAGGAAGGAATGGGCTGCCATCAGAATTCAAACCGCTTTC

CGTGGATTCCTGGCGAGAAGGGCATTGAAGGCTTTGAAAGGGATAGTAAGGCTGCAAGCTCTGGTGAGAGGGAGGCAAGTGAGGAAACAAGCTGCTGTTA

CGTTGAGGTGTATGCAGGCACTGGTGAGAGTCCAAGCTCGATTGAGGGCCCGCCGTGTTCGAATGTCCATTGAAGGCCAAGCTGTGCAGACTTTGTTAAA

CGAACGTCGCAGTCAGGCTGATCTCTTGAAACAAGCTGAGGAAGGGTGGTGTGACAGCAAGGGTACATTGCAAGATGTGAAGAGTAAGCTACAGCTTAGG

CAAGAAGGAGCTTTCAAGAGAGAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACCTTTAAACCAAGC

CGCCATTAAATCAAGTGGGCGAGACGTAACACAACAATCGAAGTCTGATTTAGAAGATTAA

AA sequence

Show only first row Show all

>Lus10014870 pacid=23142438 polypeptide=Lus10014870 locus=Lus10014870.g ID=Lus10014870.BGIv1.0 annot-version=v1.0

MGAPAKWVKSIMGLNKSDAINEKINGGKGKKCKLWRSSSGEMPSSWKGFKGRNMSASDCSGCSPKSDPFSSAMATLVRAPPKDFRIVRKEWAAIRIQTAF

RGFLARRALKALKGIVRLQALVRGRQVRKQAAVTLRCMQALVRVQARLRARRVRMSIEGQAVQTLLNERRSQADLLKQAEEGWCDSKGTLQDVKSKLQLR

QEGAFKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPLNQAAIKSSGRDVTQQSKSDLED

DESeq2's median of ratios [FLAX]

Coexpressed genes

Only top 10 genes are shown Show all Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At alias	At description	Locus	MR	r
AT2G26180	IQD6	IQ-domain 6 (.1)	Lus10014870 [exp]	0	1
AT1G69770	CMT3	chromomethylase 3 (.1)	Lus10026024 [exp]	1.7	0.9822
AT5G48600	ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...	Lus10005240 [exp]	3.2	0.9729
AT3G57060		binding (.1.2)	Lus10039013 [exp]	3.5	0.9674
AT1G21730		P-loop containing nucleoside t...	Lus10025688 [exp]	3.9	0.9597
AT3G57060		binding (.1.2)	Lus10027308 [exp]	4.2	0.9678
AT2G46980		unknown protein	Lus10038019 [exp]	4.6	0.9524
AT2G04235		unknown protein	Lus10016054 [exp]	6.0	0.9665
AT1G69770	CMT3	chromomethylase 3 (.1)	Lus10014315 [exp]	6.3	0.9669
AT2G07170		ARM repeat superfamily protein...	Lus10027590 [exp]	9.8	0.9658
AT5G18700	RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...	Lus10033979 [exp]	9.9	0.9624

Lus10014870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10014870 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10014870 coexpression network