Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33050 482 / 1e-166 EDA39 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) AT2G26190 465 / 3e-159 calmodulin-binding family protein (.1) AT5G57010 428 / 2e-145 calmodulin-binding family protein (.1) AT3G13600 388 / 2e-128 calmodulin-binding family protein (.1) AT3G58480 379 / 4e-125 calmodulin-binding family protein (.1) AT3G52870 315 / 4e-102 IQ calmodulin-binding motif family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013526 [exp] 776 / 0 AT5G57010 581 / 0.0 calmodulin-binding family protein (.1) Lus10039178 [exp] 402 / 2e-133 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Lus10025173 [exp] 394 / 3e-131 AT3G13600 575 / 0.0 calmodulin-binding family protein (.1) Lus10016052 [exp] 394 / 3e-131 AT3G13600 582 / 0.0 calmodulin-binding family protein (.1) Lus10013759 [exp] 395 / 1e-130 AT3G58480 690 / 0.0 calmodulin-binding family protein (.1) Lus10016219 [exp] 373 / 9e-123 AT3G58480 569 / 0.0 calmodulin-binding family protein (.1) Lus10029324 [exp] 369 / 9e-123 AT3G58480 472 / 6e-163 calmodulin-binding family protein (.1) Lus10003257 [exp] 339 / 2e-111 AT3G52870 576 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10035595 [exp] 338 / 3e-110 AT3G52870 575 / 0.0 IQ calmodulin-binding motif family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G061901 [exp] 583 / 0 AT4G33050 601 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G226400 [exp] 568 / 0 AT4G33050 598 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G147900 [exp] 487 / 8e-168 AT2G26190 513 / 2e-178 calmodulin-binding family protein (.1) Potri.006G226500 [exp] 414 / 3e-142 AT4G33050 433 / 9e-151 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.001G006200 [exp] 402 / 8e-134 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Potri.003G218800 [exp] 403 / 2e-133 AT3G13600 734 / 0.0 calmodulin-binding family protein (.1) Potri.006G197500 [exp] 390 / 1e-128 AT3G58480 588 / 0.0 calmodulin-binding family protein (.1) Potri.016G063000 [exp] 387 / 3e-128 AT3G58480 587 / 0.0 calmodulin-binding family protein (.1) Potri.001G005600 [exp] 367 / 2e-123 AT3G13600 431 / 4e-148 calmodulin-binding family protein (.1) Potri.006G114700 [exp] 330 / 1e-107 AT3G52870 561 / 0.0 IQ calmodulin-binding motif family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014872 pacid=23142413 polypeptide=Lus10014872 locus=Lus10014872.g ID=Lus10014872.BGIv1.0 annot-version=v1.0 ATGGGACTGTCTCTTTCCCTGCTATCATCGGCTTGGAACCAAATCCTGAGACCCACTTTGCTTGGTGTATTGACCGCATCCACCATCAGGAAGGCTGCGG TTAGGTCTCAAAGCTATGGAAGGAATAATATAAATGGAGGAGTTGTTGATTTCATGAGAAACAACAGCTTCAAGAAAGAGGACTTGATGATGGAGACTTC TGAAATTATGGTTGCTGATAAGGGTTTGGTACGGTCAATGAGTTTCAAGGATTGGGGGTTGGATAATAGTGGTGAAGATAGGTTGGATAATGGTGGTAGT TGTAAAAAGTCAACACTAGTTCATGAAGCAATATTGAGCATAAAGAAGCCAGCGGCTTTGGTGGTACCGGAAGCAAAGGTGTTCTTTTCACCAAGGCCGG TGAGCGAGTTAGATGCAGCCGCAACTACACTTCAGAAGGTTTACAAGAGTTATCGTACTCGAAGAAACCTTGCTGACTGTGCTGTTGTTGTGGAGGAGCT TTGGTGGAAGGCTTTGGATTCTGTAGCTCTCAAGAAGGACTCCATCTTGTTCTTCGACGATGACAAGCATGAGACCGCTTCCTCTAAGTGGTCTCGTGCC ACAAAAAGGGTTGCCAAGGTTGGCAAGGGCTTGGCCAAAGATGATAAAGCTCAAAAGCTTGCTTTACAGCACTGGCTTGAAGCTATAGACCCACGACACA GATATGGACACAACCTACACTTCTACTATGATGTTTGGTTCAATAGCAAAAGCACACAGCCTTTCTTCTACTGGTTGGACATCGGCGACGGGAAAGAAAT AAACTTGGAGAGATGCGGGAGGGTGAAGCTACAAAAGCAATGCATATTGTATCTTGGACCGAAAGAAAGGGAAGCTTATAAAGTGATAGTGGAGAAAAGG AAGCTGGTATACATGGAGTCATGGGCACATCTGCATACAGAGGAAGGTTCAAAGTGGATATTTGTGTTGAGCACCTCAAGAGGGCTGTATGTTGGGCAAA AGAAGAAAGGGGTTTTCCAGCACTCCAGCTTCCTCTGCGGTGCTGCTACTTCTGCCGCCGGAAGACTAGTCGCCCACGATGGAGTTCTCGAGGCAATATG GCCATATAGCGGCCACTATCTTCCCACGGAGGACAATTTCAAGGAGTTCATCAGCTTCCTTGAGGAGCATAACGTTGATTTAACCAATGTCAAGAGATGC TCGATAGACGAGGACAGCATTTCGGACATCAAAGAAGGAGAAGAAGTAGCAGCAGTCAAAGTCCAGGAGGAAGAGGAAGAAAGTGTGGCTGTGGAGGAAA ACAAAGAAGACGAAAAGGAGGAGCTGGTGGTTGTATCGGCAGCAGCAGCAGCAACCAAGGAGGAGTCAATGCCGTCATCGCAATCATCGTCGTCATCATC GACGTTTGATCTGTCGAAGAGGAGGTTGTCGTGCAAGTGGAACAGTGGAGTTGGGCCAAGGATCGAGTGCGTGAGGGACTACCCAGCAGAGCTGCAGTTC AGAGCGCTGGAGCAAGTGAACTTGTCTCCAAGACCTGGAGGTTCACCATCAAATCTACTACCAATTCCATCACCAAGGCCAAGTCCTAAGATTCGGTTAT CTCCTCGACTCTCTTATATGGGCCTCCCTAGCCCAAGGCACTCCATTCCTTCCTCCGCCTAG
AA sequence Show only first row Show all	>Lus10014872 pacid=23142413 polypeptide=Lus10014872 locus=Lus10014872.g ID=Lus10014872.BGIv1.0 annot-version=v1.0 MGLSLSLLSSAWNQILRPTLLGVLTASTIRKAAVRSQSYGRNNINGGVVDFMRNNSFKKEDLMMETSEIMVADKGLVRSMSFKDWGLDNSGEDRLDNGGS CKKSTLVHEAILSIKKPAALVVPEAKVFFSPRPVSELDAAATTLQKVYKSYRTRRNLADCAVVVEELWWKALDSVALKKDSILFFDDDKHETASSKWSRA TKRVAKVGKGLAKDDKAQKLALQHWLEAIDPRHRYGHNLHFYYDVWFNSKSTQPFFYWLDIGDGKEINLERCGRVKLQKQCILYLGPKEREAYKVIVEKR KLVYMESWAHLHTEEGSKWIFVLSTSRGLYVGQKKKGVFQHSSFLCGAATSAAGRLVAHDGVLEAIWPYSGHYLPTEDNFKEFISFLEEHNVDLTNVKRC SIDEDSISDIKEGEEVAAVKVQEEEEESVAVEENKEDEKEELVVVSAAAAATKEESMPSSQSSSSSSTFDLSKRRLSCKWNSGVGPRIECVRDYPAELQF RALEQVNLSPRPGGSPSNLLPIPSPRPSPKIRLSPRLSYMGLPSPRHSIPSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33050		EDA39	embryo sac development arrest ...		Lus10014872 [exp]	0	1
AT5G57010			calmodulin-binding family prot...		Lus10013526 [exp]	1.0	0.9868
AT3G25610			ATPase E1-E2 type family prote...		Lus10034404 [exp]	1.4	0.9707
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033366 [exp]	9.2	0.9606
AT3G58480			calmodulin-binding family prot...		Lus10013759 [exp]	9.2	0.9638
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10010570 [exp]	11.5	0.9644
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10006105 [exp]	11.7	0.9686
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	12.4	0.9688
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030589 [exp]	12.8	0.9696
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035480 [exp]	15.0	0.9622
AT2G31945			unknown protein		Lus10013740 [exp]	15.5	0.9558

Compare expression of checked genes

Lus10014872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.