Plant FIBer expression Database

Lus10014873 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032119
[exp]
49 / 2e-06 AT3G27330 251 / 1e-75 zinc finger (C3HC4-type RING finger) family protein (.1)
Lus10022324
[exp]
0 / 1 AT3G27330 251 / 4e-75 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G336832
[exp]
51 / 2e-07 AT3G27330 235 / 2e-69 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info
Representative CDS sequence
>Lus10014873 pacid=23142411 polypeptide=Lus10014873 locus=Lus10014873.g ID=Lus10014873.BGIv1.0 annot-version=v1.0
ATGCGACAAGGAGGTCTAGTAGAGGTGTCAATCCTAGTAGACAAGGAAGGCCATCGGGATCTGGCCAGGCTCAGAATCTGGAGGATACTGGAATTCCACA
GAGAACAGTTCCAAGAGGCGAGTTTATCAAGCCGGAATGTTGAACGACATGGAAGGGGAGGAAGAAGAGAAGTAGCAGCAAGTGGAAATGAGGATTCATC
ATTGGCGAGAAGGGTGCAAAGAGGAGAGGAGCTTGCAAGGTTATTAAGAAGAGAGGCAGCAGCAACTAGTGGGAGAAGAACAAGACCAAGTCAAGATGGA
GATGCTGCTTTAGCTTTGCGGCTTCAGAGGCAAGAGTTCATGGAAGGTTTTAGGGAGACTGAAGAACGATCAGGTAGACGTCTGTTGGCTGCTAGACAAA
ACTTGAGAGCCATGGCATCTAGTGCGGTTTATGTTCGGTACAGGAACAGAATGGCAAGCAGATCAAGCCAGTTAGCTAAGTTGGTCATCATTTTTGCAGT
GCTAGCAATGTGTGCAACAGCACAAGAGATAGCTGAAGGACCAGGAGGATCAAGTGCTCCATCACCAAGTATTGTTGGGCAACCTGGTGCTTCCTCAGCT
TCTGGAATCAGCGGCTCACCCTATGTGCTTGCTGCAACATTGTTTGGTTCTTCCGCCTTGGGTTTCTTCCTTTCTGGGTTCAACTGA
AA sequence
>Lus10014873 pacid=23142411 polypeptide=Lus10014873 locus=Lus10014873.g ID=Lus10014873.BGIv1.0 annot-version=v1.0
MRQGGLVEVSILVDKEGHRDLARLRIWRILEFHREQFQEASLSSRNVERHGRGGRREVAASGNEDSSLARRVQRGEELARLLRREAAATSGRRTRPSQDG
DAALALRLQRQEFMEGFRETEERSGRRLLAARQNLRAMASSAVYVRYRNRMASRSSQLAKLVIIFAVLAMCATAQEIAEGPGGSSAPSPSIVGQPGASSA
SGISGSPYVLAATLFGSSALGFFLSGFN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10014873
[exp]
0 1
AT2G37740 C2H2ZnF ATZFP10, ZFP10 zinc-finger protein 10 (.1) Lus10021490
[exp]
1.7 0.9665
AT5G13750 ZIFL1 zinc induced facilitator-like ... Lus10034847
[exp]
2.0 0.9681
AT2G40260 GARP Homeodomain-like superfamily p... Lus10040945
[exp]
3.7 0.9669
Lus10026056
[exp]
4.0 0.9594
AT3G11340 UGT76B1 UDP-dependent glycosyltransfer... Lus10016461
[exp]
4.6 0.9625
AT2G18150 Peroxidase superfamily protein... Lus10028337
[exp]
4.9 0.9630
AT3G14470 NB-ARC domain-containing disea... Lus10011278
[exp]
5.2 0.9591
AT4G12010 Disease resistance protein (TI... Lus10008221
[exp]
6.7 0.9528
AT2G37050 Leucine-rich repeat protein ki... Lus10004275
[exp]
8.5 0.9648
AT4G37320 CYP81D5 "cytochrome P450, family 81, s... Lus10000038
[exp]
8.9 0.9637

Lus10014873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.