Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27340 146 / 1e-45 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022323 [exp] 221 / 4e-75 AT3G27340 186 / 7e-62 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G336600 [exp] 179 / 1e-58 AT3G27340 207 / 4e-70 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06155 [flax] [poplar] GBBH-like_N Gamma-butyrobetaine hydroxylase-like, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10014875 pacid=23142402 polypeptide=Lus10014875 locus=Lus10014875.g ID=Lus10014875.BGIv1.0 annot-version=v1.0 ATGCTGGGAGTACAAAGAGCTACCATGAGGGCAATCCAAACAAGTGTTACCGGTCCGCGGCTCACTAAATTCACTCTTGGAGCGCCCAAACGAGTAGAAG TGGAATATGGGAATGGTGACAAGTTTAGCCTGTCAGCTGAGTTCTTGAGAATTCACAGTCCTGCCGTTGATGGGAAAGTTAGGTCAATTGGTGGTGAAAA GAACACATTTGGTTTATTTAACATGACTGATCGTTGCTCAAAACTGTCAAATCCAACAGGTGATATCAGGGCGTCGTCATGTAGGAAAAATTCTGCAGAA CCTGTAGGAAACTATGGGGTAAGGATAGTGTTTGATGACCTACATAAAACTGGGATCTATACCTGGGACTATTTCTTTCACCTGGGAATCAACAAATTCT CCTTGAGCGGAGACTATATCAGGACATTAAAGAGGCATGGACTTAGCCGCGATCCAGCAAGGAGACGTTCACCTTCCTGA
AA sequence Show only first row Show all	>Lus10014875 pacid=23142402 polypeptide=Lus10014875 locus=Lus10014875.g ID=Lus10014875.BGIv1.0 annot-version=v1.0 MLGVQRATMRAIQTSVTGPRLTKFTLGAPKRVEVEYGNGDKFSLSAEFLRIHSPAVDGKVRSIGGEKNTFGLFNMTDRCSKLSNPTGDIRASSCRKNSAE PVGNYGVRIVFDDLHKTGIYTWDYFFHLGINKFSLSGDYIRTLKRHGLSRDPARRRSPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27340			unknown protein		Lus10014875 [exp]	0	1
AT4G32360			Pyridine nucleotide-disulphide...		Lus10031463 [exp]	12.5	0.7391
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10013684 [exp]	43.2	0.7157
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10039948 [exp]	56.9	0.7125
AT1G64280		SAI1, NIM1, NPR...	SALICYLIC ACID INSENSITIVE 1, ...		Lus10018756 [exp]	66.5	0.7086
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10039455 [exp]	75.7	0.6893
					Lus10010369 [exp]	196.5	0.6544
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10010977 [exp]	212.6	0.6464
AT2G03870		EMB2816	EMBRYO DEFECTIVE 2816, Small n...		Lus10035639 [exp]	216.6	0.6460
AT1G70150			zinc ion binding (.1)		Lus10029210 [exp]	269.4	0.6248

Compare expression of checked genes

Lus10014875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.