Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02990 660 / 0 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT2G44020 444 / 4e-152 Mitochondrial transcription termination factor family protein (.1) AT2G21710 147 / 8e-38 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT4G38160 120 / 6e-30 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT1G78930 119 / 2e-28 Mitochondrial transcription termination factor family protein (.1) AT4G14605 110 / 8e-26 Mitochondrial transcription termination factor family protein (.1) AT5G55580 93 / 6e-20 Mitochondrial transcription termination factor family protein (.1) AT1G61970 86 / 6e-18 Mitochondrial transcription termination factor family protein (.1.2) AT2G34620 80 / 2e-16 Mitochondrial transcription termination factor family protein (.1) AT2G03050 80 / 2e-16 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022321 [exp] 747 / 0 AT4G02990 540 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10004614 [exp] 439 / 7e-150 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10004534 [exp] 305 / 5e-100 AT2G44020 477 / 7e-168 Mitochondrial transcription termination factor family protein (.1) Lus10042322 [exp] 140 / 2e-35 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Lus10013854 [exp] 128 / 6e-33 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10004535 [exp] 114 / 1e-29 AT2G44020 206 / 6e-65 Mitochondrial transcription termination factor family protein (.1) Lus10035714 [exp] 119 / 1e-28 AT1G78930 582 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10003775 [exp] 105 / 8e-24 AT5G55580 546 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10032061 [exp] 99 / 1e-21 AT4G14605 521 / 0.0 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G137400 [exp] 705 / 0 AT4G02990 669 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Potri.013G116700 [exp] 464 / 9e-160 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.009G116200 [exp] 141 / 1e-35 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 128 / 8e-33 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.009G170300 [exp] 128 / 3e-32 AT4G38160 479 / 8e-170 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.007G001800 [exp] 114 / 9e-27 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.017G067600 [exp] 107 / 8e-25 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.001G361800 [exp] 99 / 8e-22 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.001G034600 [exp] 93 / 3e-20 AT5G07900 197 / 4e-59 Mitochondrial transcription termination factor family protein (.1) Potri.004G222000 [exp] 88 / 1e-18 AT5G07900 200 / 1e-60 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10014877 pacid=23142437 polypeptide=Lus10014877 locus=Lus10014877.g ID=Lus10014877.BGIv1.0 annot-version=v1.0 ATGAGAATCGGAAGCTATGCAGGAATCACCATCCCCACTTCCTTGTTCTCACACCCACAGCTCCCACAATATCTCCACCGCAATCTTCAGTTAAACTCGA CCAAGACAGTTAGATGCTTAGGGGGGAAGCCTCAGTATGCTTCCGTCGCAGACCGCACTTCGTCCTCCTCAAGCTCCAACACTTCTTCTTCTCCATCGAA AACTCGAACTCGCAAGAAGCCATCAGGAGGAGCAGGAGGAGGTAAGTCATCTCTCTACGCTCGTCCGAGTTTGTTCGAGATGCACGAAGACAAAGTAGCG ATTCGTGGCAAGGTCTATGAGTTCCTTCGAGGAATTGGAATTGTTCCAGACGAGCTCGACGGATTGGAGCTTCCGGTGACGGCAGATGTTATGAAGGAGC GTGTGGATTTTCTCCATAAATTAGGGCTCACAATCGAAGACATCAACAACTACCCTCTTGTTCTTGGCTGCAGCGTCAAGAAGAACATGATCCCCGTGCT CGACTATCTCGGCAAATTAGGGGTGAGGAAATCAACTTTCACACATTTCTTGAGAAGGTATCCGCAGGTTCTCCACTCTAGTGTTGTAGTTGACCTTGCT CCAGTAGTGAAGTATCTTCAAGGTATGGACATCAAGCCGAATGATGTTCCTAGGGTTCTGGAGAAGTATCCTGAGGTTTTAGGGTTTAAGCTGGAAGGTA CAATGAGCACATCTGTGGCTTATCTGGTTGGGATTGGGGTTGCTAGGAGGGAGATTGGTGGGCTTTTGACTAGGTATCCTGAGATTCTAGGGATGCGGGT GGGTCGAGTTATCAAGCCATTTGTGGAGTATCTTGAGAGCTTGGGTATGCCAAGGCTAGCTGTGGCTAGATTGATAGAGAAACGACCTCACATTCTTGGG TTTGCATTGGCTGACCTGATTAAACCGAACATCGAGACCCTTTTCGAGTTCAATGTAAGAAGAGAGGCAGTTGCTTCAGTTATAGCTCAGTATCCTGAGA TTATTGGACTTAACCTCAAGGTCAAGCTTCATGAGCAGCTGACGCTGCTGAATTCTGTTACCGGGTTGGAATCTGAGGATTTCGGGAGGGTAATCGAGAG GATGCCGCAGGTTGCTAGCCTTGGTAAATCCGCTATGCTGAAGCATGTGGAGTTTCTGAAGCAATGTGGGTTTTCACGGGATCAGATGAGGGTGATGGTT GTCGGGTGTCCTCAGTTGCTTGCTCTGAATATTGACATTATGAAACTGAGCTTTGATTTCTTCCAGGAGGAGATGGATAGGCCTTTGAAGGATTTGGTTG GTTTTCCAGCTTTCTTTACTTACGGTCTGGAGTCCACGGTGAAACCTAGGCATAGGAAGGTTAAAGCCAAAGGGTTGAAGTGTTCGCTATCGTGGCTTTT GAACTGCTCTGATGAGAGGTTCGAGCAACGAATGGAATATGATACCATTGGCATGGACGAGATGGAAATGCCGAGTTTTGACATGAATACGTTGATGGAT TCAAGGAATGATGATTCGGGTTCTGACTCAGACGACAGTGATGATGATGATTATCCATGA
AA sequence Show only first row Show all	>Lus10014877 pacid=23142437 polypeptide=Lus10014877 locus=Lus10014877.g ID=Lus10014877.BGIv1.0 annot-version=v1.0 MRIGSYAGITIPTSLFSHPQLPQYLHRNLQLNSTKTVRCLGGKPQYASVADRTSSSSSSNTSSSPSKTRTRKKPSGGAGGGKSSLYARPSLFEMHEDKVA IRGKVYEFLRGIGIVPDELDGLELPVTADVMKERVDFLHKLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTHFLRRYPQVLHSSVVVDLA PVVKYLQGMDIKPNDVPRVLEKYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGLLTRYPEILGMRVGRVIKPFVEYLESLGMPRLAVARLIEKRPHILG FALADLIKPNIETLFEFNVRREAVASVIAQYPEIIGLNLKVKLHEQLTLLNSVTGLESEDFGRVIERMPQVASLGKSAMLKHVEFLKQCGFSRDQMRVMV VGCPQLLALNIDIMKLSFDFFQEEMDRPLKDLVGFPAFFTYGLESTVKPRHRKVKAKGLKCSLSWLLNCSDERFEQRMEYDTIGMDEMEMPSFDMNTLMD SRNDDSGSDSDDSDDDDYP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10014877 [exp]	0	1
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10021118 [exp]	1.0	0.9410
AT1G06190			Rho termination factor (.1.2)		Lus10022920 [exp]	3.2	0.9239
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10028517 [exp]	3.5	0.9233
AT2G16800			high-affinity nickel-transport...		Lus10019792 [exp]	4.1	0.8976
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10038140 [exp]	4.5	0.9184
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10042081 [exp]	5.7	0.8983
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10028683 [exp]	6.3	0.9122
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10024866 [exp]	6.9	0.8899
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10039064 [exp]	7.3	0.8958
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10009126 [exp]	7.5	0.8948

Compare expression of checked genes

Lus10014877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.