Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01720 1187 / 0 unknown protein AT5G25265 62 / 7e-10 unknown protein AT5G13500 57 / 2e-08 unknown protein AT2G25260 56 / 6e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022320 [exp] 1587 / 0 AT3G01720 1181 / 0.0 unknown protein Lus10005347 [exp] 65 / 7e-11 AT5G25265 612 / 0.0 unknown protein Lus10041028 [exp] 65 / 1e-10 AT5G25265 618 / 0.0 unknown protein Lus10009691 [exp] 55 / 2e-07 AT5G13500 541 / 0.0 unknown protein Lus10036037 [exp] 54 / 3e-07 AT5G13500 542 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G336400 [exp] 1290 / 0 AT3G01720 1215 / 0.0 unknown protein Potri.001G028100 [exp] 63 / 3e-10 AT5G13500 570 / 0.0 unknown protein Potri.003G195600 [exp] 61 / 1e-09 AT5G13500 532 / 0.0 unknown protein Potri.001G275600 [exp] 58 / 1e-08 AT5G13500 543 / 0.0 unknown protein Potri.009G070000 [exp] 57 / 2e-08 AT5G13500 515 / 0.0 unknown protein Potri.018G023100 [exp] 57 / 3e-08 AT5G25265 583 / 0.0 unknown protein Potri.006G258800 [exp] 56 / 5e-08 AT5G25265 577 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014878 pacid=23142396 polypeptide=Lus10014878 locus=Lus10014878.g ID=Lus10014878.BGIv1.0 annot-version=v1.0 ATGGCAAAAGTCACGGTCTTGATCATGTTCGCGCTGACGAGTTGGTTCCTCGTCGTCGATGGCGCCACCAGGTCGGTTGGGGAAATGGGTTACCGGATCC ACACTTTGTTCTCGGTGGAGTGCCAGAACTATTTTGACTGGGAGACAGTGGGACTCATGCACAGTTACAAGAAGGCCCAGCAACCGGGTCCCATAACCCG ACTCCTCAGCTGCACGGAGGAGGAGAAGAAGAGTTACAAAGGGATGCACTTGGCTCCCACTCTTGAAGTCCCTTCCATGAGCAGACATCCCAAGACTGGT GACTGGTACCCTGCAATTAACAAACCTGCTGGAGTTGTTCATTGGCTTGAACACAGCAAGGATGCTAAGAATGTGGATTGGGTTGTTATTCTAGATGCAG ACATGGTAATTAGAGGGCCGATTATACCTTGGGAACTCGGTGCAGAGAGAGGAAGGCCTGTGGCTGCTTATTATGGATACTTGGTTGGTTGTGATAATAT ATTGGCTAAAATCCATACAAAGCATCCTGAACTCTGCGACAAGGTCGGAGGGCTTTTAGCCATGCACATAGATGATCTTCGGGCATTAGCACCGATGTGG CTTGCAAAGACAGAAGAAGTACGTGCAGACACGGCTCACTGGGCTACCAATATTACCGGTGACATCTACGGCAAAGGATGGATTAGTGAGATGTATGGCT ACTCGTTTGGTGCAGCTGAAGTAGGACTTCGCCATAAAATTAACGAAGACGTGATGATCTACCCTGGTTACATTCCACGTCCAGGTGTTGAGCCCATTCT GTTTCACTATGGCTTGCCATTTACTGTTGGGAATTGGTCTTTTAGTAAGTTACAGCATCATGAAGATGATATTGTTTATAGATGCGGGCAGCTCTTTCCT GAACCTCCATATCCGAGAGAGGTCTATTATATGGAATCTGAGCCACATAAGAGACGAGCACTGCTTCTGAGTATAGAGTGCATGAACACTTTGAACGAAG GACTCGTATTAAGGCATGCTGCAGATGGATGCCCAAAGCCAAAATGGTCGAAATACTTGAGCTTTTTAAAGAGTAAAACTTTTGCTAATCTTACTCATCC GAAAATTTCTGTTCCTGGTGACTGGCAAACTAAGGATACCAGAGAACAGCAGCATGTCGTCAGTGAACCCAATAAACCACATCCGAAAATCCACACAGTT TTTTCTACAGAATGTACTCGTTACTTTGATTGGCAAACCATTGGTCTTGTCCACAGTTTCCATCTCAGTGGCCAGCCTGGAAATATAACAAGACTTCTCA GCTGTACAGATGAAGACCTAAAGCAATACAAAGGCCACGATTTGGCTCCTACGCATTATGTGCCCTCTATGAGCCGGCATCCGCTAACTGGTGACTGGTA TCCAGCAATCAATAAACCTGCTGGGGTCCTTCATTGGCTTAACCATGCAGATAATATTGATGCTGAATATATCGTGATTCTCGATGCTGATATGATTTTG AGAGGTCCAATCACACCGTGGGAGTTTAATGCATCCCGTGGTCATCCTGTATCAACTCCTTATGAGTACCTGATTGGCTGCGACAATGAGCTTGCAAAAA TGCATACAAGCCATCCGGAGTACTGTGACAAGGTTGGGGGTGTAATCATCATGCATATCGATGATCTTAGGAAGTTTGCCATGTATTGGCTGCTTAAGAC TGAAGAGGTTCGTTTTGACAAAGAGCATTACGACACAAATCTCACTGGAGACATATATTCGTCTGGTTGGATTAGTGAGATGTATGGTTACTCCTTTGGT GCTGCAGAGCTGAAACTGCGGCATATAGTGAGTCGGGAGATACTGATATATCCAGGATATGTTCCGGAAGCAGGTGTGAAGTACAGAGTTTTCCATTATG GTTTAGAATTCAGCGTTGGAAATTGGAGCTTTGACAAGGCAAATTGGAGAGACAAAGATGTCGTGAACACATGCTGGGCTAAATTTCCAGACCCACCAGA TCCTTCAACTCTGGATCGATCCAACGAGGACACCCTACAGAAGAACCTACTCAGTATAGAATGCGGTAAGAAGCTAAATGAGGCGTTAATGCTGCATCAC AAGAAGAGGAAGTGCCATGACCCCGGATCTCGGACCTCACCAAAGCTGGAAACTTTAATTTCAAGGAGAATTGGAAGGAGGGTGAACAAGGTTAATGCCA GCAAGATCAGCAGTGAGGCAGTGAAGAACCATCCAAAAGTAGGGTCATCTCTAGCTGATGAAAATGATGGTCACTTCCATTCTTTGAGGATATGGGTTAT TGCTCTATGGGCACTATCTGGTTTGGGATTTGTAGCAGTCATGTGGATGGTGTTTTCAGGCCGTAAAAGTAAGGGAACGAAAGCTAAGAGCGGTAGAAGT AGGAAACGACGTCAGAGTCAAGATAGTTGGACATGA
AA sequence Show only first row Show all	>Lus10014878 pacid=23142396 polypeptide=Lus10014878 locus=Lus10014878.g ID=Lus10014878.BGIv1.0 annot-version=v1.0 MAKVTVLIMFALTSWFLVVDGATRSVGEMGYRIHTLFSVECQNYFDWETVGLMHSYKKAQQPGPITRLLSCTEEEKKSYKGMHLAPTLEVPSMSRHPKTG DWYPAINKPAGVVHWLEHSKDAKNVDWVVILDADMVIRGPIIPWELGAERGRPVAAYYGYLVGCDNILAKIHTKHPELCDKVGGLLAMHIDDLRALAPMW LAKTEEVRADTAHWATNITGDIYGKGWISEMYGYSFGAAEVGLRHKINEDVMIYPGYIPRPGVEPILFHYGLPFTVGNWSFSKLQHHEDDIVYRCGQLFP EPPYPREVYYMESEPHKRRALLLSIECMNTLNEGLVLRHAADGCPKPKWSKYLSFLKSKTFANLTHPKISVPGDWQTKDTREQQHVVSEPNKPHPKIHTV FSTECTRYFDWQTIGLVHSFHLSGQPGNITRLLSCTDEDLKQYKGHDLAPTHYVPSMSRHPLTGDWYPAINKPAGVLHWLNHADNIDAEYIVILDADMIL RGPITPWEFNASRGHPVSTPYEYLIGCDNELAKMHTSHPEYCDKVGGVIIMHIDDLRKFAMYWLLKTEEVRFDKEHYDTNLTGDIYSSGWISEMYGYSFG AAELKLRHIVSREILIYPGYVPEAGVKYRVFHYGLEFSVGNWSFDKANWRDKDVVNTCWAKFPDPPDPSTLDRSNEDTLQKNLLSIECGKKLNEALMLHH KKRKCHDPGSRTSPKLETLISRRIGRRVNKVNASKISSEAVKNHPKVGSSLADENDGHFHSLRIWVIALWALSGLGFVAVMWMVFSGRKSKGTKAKSGRS RKRRQSQDSWT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01720			unknown protein		Lus10014878 [exp]	0	1
AT3G07140			GPI transamidase component Gpi...		Lus10038183 [exp]	4.0	0.7156
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10039538 [exp]	5.2	0.7702
AT2G01080			Late embryogenesis abundant (L...		Lus10036163 [exp]	5.8	0.7542
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10033198 [exp]	6.0	0.7493
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10039102 [exp]	6.3	0.6891
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10019503 [exp]	6.7	0.6950
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10003065 [exp]	9.5	0.6691
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10035692 [exp]	9.5	0.7044
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10008166 [exp]	10.2	0.7031
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10032853 [exp]	10.4	0.6780

Compare expression of checked genes

Lus10014878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.