Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40650 465 / 2e-167 SDH2-2 succinate dehydrogenase 2-2 (.1) AT3G27380 453 / 8e-163 SDH2-1 succinate dehydrogenase 2-1 (.1.2) AT5G65165 317 / 2e-108 SDH2-3 succinate dehydrogenase 2-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022319 [exp] 546 / 0 AT5G40650 469 / 5e-169 succinate dehydrogenase 2-2 (.1) Lus10014573 [exp] 501 / 0 AT5G40650 469 / 5e-169 succinate dehydrogenase 2-2 (.1) Lus10032113 [exp] 500 / 0 AT5G40650 467 / 3e-168 succinate dehydrogenase 2-2 (.1) Lus10028289 [exp] 319 / 3e-109 AT5G65165 435 / 1e-154 succinate dehydrogenase 2-3 (.1) Lus10040198 [exp] 295 / 6e-100 AT5G65165 391 / 1e-137 succinate dehydrogenase 2-3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338400 [exp] 439 / 2e-157 AT5G40650 444 / 4e-159 succinate dehydrogenase 2-2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014879 pacid=23142395 polypeptide=Lus10014879 locus=Lus10014879.g ID=Lus10014879.BGIv1.0 annot-version=v1.0 ATGGCGTCCAGCTTACTGAGGCGCGGCCTTTCGCTGGCCAGGACATCTCCTTCGACAGCGGCGTCGCTGGCATCGAGGCTTGTCTCCGTCCGTCCTCACG CTTCGGAGGCGGAGGCGCAGCAGGTGGAACCGTCGGCCACCTCCGTCAAAAACATCAAGACCTTCCAAATCTACCGTTGGAATCCGGACAATCCTTCTAA GCCGGAGCTGAAGGACTACGAAATCGATCTCAAGGAGTGCGGGCCGATGGTCCTCGACGCGCTCATCAAGATAAAAAACGAGATGGATCCGTCCTTGACC TTCCGCCGCTCCTGCCGCGAAGGTATCTGCGGCTCATGCGCCATGAACATCGACGGCTGTAACGGCCTCGCCTGCCTCACCAAGATCTCCGCCGGGGAAC CAACTACGATCACCCCGCTGCCTCACATGTTCGTCATTAAGGATCTCGTCGTTGACATGTCGAATTTCTACAACCAGTATAAGAGTATTGAGCCATGGTT GAAGCGGAAGAGCCCCACGGAGGTTCCAGGAAAGGAGATTCTGCAGAGCAAGAAGGATAGGTCGAAGCTTGATGGGATGTATGAGTGCATATTGTGCGCT TGCTGTAGCACTTCCTGCCCTAGCTACTGGTGGAACCCTGAGTCTTATTTGGGCCCTGCTGCTTTGCTTCATGCGAATAGATGGATAAGCGACAGCCGTG ATGAGTACACAAAGGAACGACTGGATGCTATAAACGACGAGTTTAAGCTGTACAGGTGCCATACAATCTTGAATTGTGCTCGTGCCTGCCCCAAAGGCTT GAACCCTGGGAAGCAGATCCAGAATATAAAGGGTCTTCAGATGGTCGGTGGTGCTTGA
AA sequence Show only first row Show all	>Lus10014879 pacid=23142395 polypeptide=Lus10014879 locus=Lus10014879.g ID=Lus10014879.BGIv1.0 annot-version=v1.0 MASSLLRRGLSLARTSPSTAASLASRLVSVRPHASEAEAQQVEPSATSVKNIKTFQIYRWNPDNPSKPELKDYEIDLKECGPMVLDALIKIKNEMDPSLT FRRSCREGICGSCAMNIDGCNGLACLTKISAGEPTTITPLPHMFVIKDLVVDMSNFYNQYKSIEPWLKRKSPTEVPGKEILQSKKDRSKLDGMYECILCA CCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLDAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKGLQMVGGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10014879 [exp]	0	1
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10024303 [exp]	3.3	0.8699
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	6.9	0.8545
AT5G23230		NIC2	nicotinamidase 2 (.1)		Lus10040988 [exp]	7.4	0.8550
AT3G60690			SAUR-like auxin-responsive pro...		Lus10015879 [exp]	7.9	0.8674
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10002486 [exp]	8.8	0.8043
AT1G16840			unknown protein		Lus10037317 [exp]	10.2	0.7845
AT4G38225			unknown protein		Lus10013843 [exp]	14.4	0.8616
AT3G60690			SAUR-like auxin-responsive pro...		Lus10009286 [exp]	15.0	0.8576
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10012683 [exp]	16.1	0.8130
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10036629 [exp]	17.2	0.8352

Compare expression of checked genes

Lus10014879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.