Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27390 307 / 1e-99 unknown protein AT5G40640 299 / 1e-96 unknown protein AT4G12680 148 / 1e-39 unknown protein AT4G37030 128 / 2e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022317 [exp] 544 / 0 AT3G27390 722 / 0.0 unknown protein Lus10032110 [exp] 421 / 3e-144 AT3G27390 728 / 0.0 unknown protein Lus10014575 [exp] 397 / 2e-133 AT5G40640 714 / 0.0 unknown protein Lus10011021 [exp] 163 / 4e-45 AT4G37030 698 / 0.0 unknown protein Lus10001003 [exp] 156 / 2e-42 AT4G37030 707 / 0.0 unknown protein Lus10016056 [exp] 151 / 1e-40 AT4G12680 749 / 0.0 unknown protein Lus10025177 [exp] 144 / 4e-38 AT4G12680 738 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338900 [exp] 358 / 1e-119 AT5G40640 718 / 0.0 unknown protein Potri.007G035400 [exp] 150 / 1e-40 AT4G12680 411 / 9e-138 unknown protein Potri.007G042400 [exp] 142 / 2e-37 AT4G37030 707 / 0.0 unknown protein Potri.014G170800 [exp] 135 / 4e-35 AT4G12680 685 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014881 pacid=23142443 polypeptide=Lus10014881 locus=Lus10014881.g ID=Lus10014881.BGIv1.0 annot-version=v1.0 ATGCTTGCCTACTGCTTGGTTATGTGGCTTGTGATTGGATTTTCCGGGAGCATCATTGGTGGAGCACTATATGATGGAACTATAGACACTGTTAAAGGCT GTTTTACTATTAGCAGAGACTTTGGTGACGTGTGTTTTCATTCATATTCCTCACTTATGGATGACCTACAGCAAAAAGGGCCTGAAGATGGCAACTATTA TGAGATCAGATTGCTTCAACTTCCTGGTGCCCTCATTGCTGGTGTGCTTGGTCTTTTGGTCGACTTCCCGATCATCTCTCTTGTGGCCTTATGCAAAAGC CCATTCATGCTGTCTTGCATCTTGCTGTGGCCACTGGCTGTTCTTGGAGCATTATTGGCATCCGTTGCATCAAGCGTGGTTCTGGGTGCTTATGCGGCAG TGATTGTTTATCAGGAGTCCTCTTTTTGGTTTGGACTTCGTTACATTGTTGCATCTTTGGCCATCTACGACGAGTACAGCAATGACATTCTTGACTTGCC AGAAGGATCTTGTTTTCCAAGGCCACAATACAGGAAGAAGTCCTCCCGCTCAGCCTCCATGGAAAAGCTTACGTCTTCGTTCAAACAATCTTTCCCACGG TCCATGTCATTAGTTGGTCCTATGGTTGATGTGAAACCATTTGAGCTTCTTGAGAGCTTGTTCAAGGACTGTCAAGTCCATGGAGAGAAGTTCCTCTCTC AAGGACTTATAACTCAACAAGACATTGAAGATGCCAAATCTAGTAAAGAAGACAATGTCACAGAGATAACTAGCACGAATAGGCCAAAAGATACATTTTT CGACTGGTTTCTGAATCCATTTCTGATCATCAAAGAGCAACTTATGGCCCAGAATCTTTCCAAGTCAGAAGAGGATTACCTCTGCAAGTTGGTGCTTCTG AGTGGTGACCCTGTCAGGTTGAAAGCTACATATATCGGCTCCCCACCAGAGACTAAGCGCAAGCATGCTGAACTCGATGCACTAGCTAGAAGAAAGAATG GGGGCAAGAAGTTTGCGCGGTCGCAAAGTACATTTGCTAGGATCTTCAGTCAGATGTCTGAGAGGGGTCCAAGCTTCAACTACAGTTCTGATACGGAGAT TCATCCGGATGTTTCTAGGAATGTAGACATTGTATGA
AA sequence Show only first row Show all	>Lus10014881 pacid=23142443 polypeptide=Lus10014881 locus=Lus10014881.g ID=Lus10014881.BGIv1.0 annot-version=v1.0 MLAYCLVMWLVIGFSGSIIGGALYDGTIDTVKGCFTISRDFGDVCFHSYSSLMDDLQQKGPEDGNYYEIRLLQLPGALIAGVLGLLVDFPIISLVALCKS PFMLSCILLWPLAVLGALLASVASSVVLGAYAAVIVYQESSFWFGLRYIVASLAIYDEYSNDILDLPEGSCFPRPQYRKKSSRSASMEKLTSSFKQSFPR SMSLVGPMVDVKPFELLESLFKDCQVHGEKFLSQGLITQQDIEDAKSSKEDNVTEITSTNRPKDTFFDWFLNPFLIIKEQLMAQNLSKSEEDYLCKLVLL SGDPVRLKATYIGSPPETKRKHAELDALARRKNGGKKFARSQSTFARIFSQMSERGPSFNYSSDTEIHPDVSRNVDIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27390			unknown protein		Lus10014881 [exp]	0	1
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	4.7	0.8429
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008855 [exp]	7.1	0.8375
AT1G19485			Transducin/WD40 repeat-like su...		Lus10018573 [exp]	7.5	0.8071
					Lus10028270 [exp]	8.0	0.8038
AT1G79030			Chaperone DnaJ-domain superfam...		Lus10032666 [exp]	10.9	0.7791
AT3G45900			Ribonuclease P protein subunit...		Lus10034732 [exp]	11.3	0.8208
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10038644 [exp]	12.0	0.8082
AT1G77610			EamA-like transporter family p...		Lus10018189 [exp]	13.8	0.7575
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10029476 [exp]	14.4	0.8370
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10017754 [exp]	14.8	0.8193

Compare expression of checked genes

Lus10014881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.