Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48670 114 / 8e-30 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) AT1G65330 106 / 3e-27 MADS AGL37, PHE1 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) AT1G65300 105 / 4e-27 MADS AGL38, PHE2 PHERES2, AGAMOUS-like 38 (.1) AT5G26630 102 / 5e-26 MADS MADS-box transcription factor family protein (.1) AT3G05860 100 / 2e-25 MADS MADS-box transcription factor family protein (.1.2.3) AT5G26650 102 / 4e-25 MADS AGL36 AGAMOUS-like 36 (.1) AT5G27960 100 / 8e-25 MADS AGL90 AGAMOUS-like 90 (.1) AT2G28700 97 / 3e-23 MADS AGL46 AGAMOUS-like 46 (.1) AT1G31630 97 / 4e-23 MADS AGL86 AGAMOUS-like 86 (.1) AT1G31640 97 / 8e-23 MADS AGL92 AGAMOUS-like 92 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022316 [exp] 379 / 6e-134 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10022325 [exp] 278 / 3e-94 AT1G65300 113 / 1e-30 PHERES2, AGAMOUS-like 38 (.1) Lus10014578 [exp] 178 / 5e-55 AT5G48670 182 / 5e-56 AGAMOUS-like 80 (.1) Lus10032108 [exp] 169 / 5e-51 AT5G48670 180 / 9e-55 AGAMOUS-like 80 (.1) Lus10007711 [exp] 135 / 6e-40 AT5G48670 83 / 5e-20 AGAMOUS-like 80 (.1) Lus10007713 [exp] 127 / 8e-37 AT1G65330 74 / 1e-16 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) Lus10029367 [exp] 93 / 2e-22 AT5G06500 88 / 1e-20 AGAMOUS-like 96 (.1) Lus10001689 [exp] 86 / 1e-21 AT5G27810 51 / 5e-10 MADS-box transcription factor family protein (.1) Lus10004459 [exp] 86 / 2e-21 AT5G27810 46 / 6e-08 MADS-box transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G002400 [exp] 154 / 2e-45 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.013G001700 [exp] 131 / 5e-37 AT5G48670 203 / 3e-64 AGAMOUS-like 80 (.1) Potri.013G018100 [exp] 125 / 5e-35 AT5G48670 187 / 1e-58 AGAMOUS-like 80 (.1) Potri.016G068132 [exp] 96 / 1e-23 AT5G48670 125 / 1e-34 AGAMOUS-like 80 (.1) Potri.013G107600 [exp] 92 / 4e-23 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.006G201700 [exp] 96 / 3e-22 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.012G109900 [exp] 71 / 6e-14 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1) Potri.002G255700 [exp] 70 / 1e-13 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1) Potri.001G329800 [exp] 62 / 7e-11 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1) Potri.001G214900 [exp] 62 / 8e-11 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10014883 pacid=23142435 polypeptide=Lus10014883 locus=Lus10014883.g ID=Lus10014883.BGIv1.0 annot-version=v1.0 ATGGCTAGAAAGAAACTGAAGCAAATGTACATAGCAAATGAGTCAGCCAGGAAGGCGACATTCAAGAAGCGGAAGTGGGGGCTGATGAAGAAAGTGAGGG AGTTGAGCACCCTCTGTGACATCCAGGCATGCGCCATCGTGAACAACCCGTTCGACGAGACACAACCGCCGGAGACATGGCCACCGACGGTAGCCGGGGT CCACCAGGTGCTGACCCGCTTCAAGGAGATGCCCATGGTGGATCAGGTACGGGATATGGTCAACCAAAAGAAGTTCCTTGATCACCGAATTAAGAAGGCC GCCAACGAGGGCAAGAAGTACGACGATGAAAACAGCCAGAAGGAGGTCGACCTAATGGTGATCCACTGCCTCGCCGGCCGAATGGACCTCCAAGGGTTGC CCATGAGCGATTTTGAGCTTATTTCCAGGACCATAGAAAGGAAGATTAAAGAAGTTGACGAATGCTTGGCGAAGCTCAGCCGCATTGACGGGGGAGGTAA TGTTCTGGTGGCCCCACAAGTTGCTGGTGATCATGGTGGTGGTGGTGGAAATCAGGAAGAGTATGTGGACGGTATGAAGCGGCAGCAACTTTTAACCGAG GCAATGATGAATGATCCGGCGGCTGCAACGGTTGGAGTGGATGATGAGTGGATGACAATGTCGATGATGATGGATCAAAGGGCTGGTACTAGCGGCATGG ATGTTGGAGAAAGCTCCTCCAATGTTGAGACGTTGTCCACTAGTAATACTATACCGACGTGGAATAGCAGTGATCCTTTCTTTGGTTGGGATTTTTAA
AA sequence Show only first row Show all	>Lus10014883 pacid=23142435 polypeptide=Lus10014883 locus=Lus10014883.g ID=Lus10014883.BGIv1.0 annot-version=v1.0 MARKKLKQMYIANESARKATFKKRKWGLMKKVRELSTLCDIQACAIVNNPFDETQPPETWPPTVAGVHQVLTRFKEMPMVDQVRDMVNQKKFLDHRIKKA ANEGKKYDDENSQKEVDLMVIHCLAGRMDLQGLPMSDFELISRTIERKIKEVDECLAKLSRIDGGGNVLVAPQVAGDHGGGGGNQEEYVDGMKRQQLLTE AMMNDPAAATVGVDDEWMTMSMMMDQRAGTSGMDVGESSSNVETLSTSNTIPTWNSSDPFFGWDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Lus10014883 [exp]	0	1
AT4G17920			RING/U-box superfamily protein...		Lus10000487 [exp]	8.8	0.6036
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	12.8	0.6007
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10019789 [exp]	14.1	0.6194
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	14.8	0.6007
					Lus10021739 [exp]	16.6	0.6007
					Lus10004437 [exp]	18.2	0.6007
					Lus10030066 [exp]	18.7	0.5896
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	19.6	0.6007
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	21.0	0.6007
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	22.2	0.6007

Compare expression of checked genes

Lus10014883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.