Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26590 961 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 937 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G10770 760 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT1G09930 759 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT5G64410 754 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT4G16370 746 / 0 ATOPT3 oligopeptide transporter (.1) AT5G53520 728 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT4G27730 725 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53510 686 / 0 ATOPT9 oligopeptide transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022541 [exp] 1107 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032585 [exp] 1079 / 0 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022543 [exp] 1078 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032586 [exp] 1058 / 0 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 1017 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016633 [exp] 1015 / 0 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10031978 [exp] 1012 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10043161 [exp] 995 / 0 AT4G26590 951 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 983 / 0 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369700 [exp] 1008 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 1000 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G004800 [exp] 927 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G003700 [exp] 845 / 0 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.007G056900 [exp] 775 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.003G145500 [exp] 769 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.002G109300 [exp] 756 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.009G079500 [exp] 754 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.005G150400 [exp] 749 / 0 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.012G019500 [exp] 746 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10014885 pacid=23142431 polypeptide=Lus10014885 locus=Lus10014885.g ID=Lus10014885.BGIv1.0 annot-version=v1.0 ATGGTCTCTGATGAATCTGAAGTGAACGATTATGAGCATCCAGTTGAGGAAGTAAGGCTGACGGTTTCGACAGCCGACGATCCTCGTGTCCCGTCGCTTA CATTTCGAACATGGGTACTCGGGGTGATTTCCTGTGTGTTCCTGTCGTTCGTCAACCAGTTCTTCAGCTTCCGGTCCAACCCGCTCTACATCGACTCTGT TTCGGTCCAGATTATGGTTCTACCACTTGGGAAGTTGATGGCTGCGACGCTTCCCAGGAAGGCGATCAATGTACCTTTGACAAAGTGGAAGTTTAGTATG AATCCCGGACCGTTCAATATGAAAGAACACGTTCTTATCACCATATTTGCCAACTGTGGAGCTAGCGGAGCACTTGGACTTACTGTTGTTACTATTGTCA AGGCTTTCTATCACAGGGGCATCAACGTGTGGGCCGCATTGTTCATGATCCTCACCACTCAGTCACTAGGGTATGGGTGGGCAGGAATGTTCAGAAAGTA CCTGGTTGATTCTCCACACATGTGGTGGCCTTCAAATCTAGTCCAGGTCTCTCTTTTCAGGGCATTGCATGAGAAAGAGAAGAGAGAAAAGGGAGGACAC ACAAGGCTCCAATTCTTTACTCTTGTTTGTGTCTCAAGCTTTGCTTACTACATACTTCCAGGGTTTCTATTCCCTTCTCTGTCAACTATTTCATTCGTTT GTTGGATATGGAAGGACTCCGTCACCGCCCAACAGATCGGTTCGGGGATGAACGGCCTTGGTGTAGGCTCGTTCGGCCTCGATTGGACCACCGTTGCCGG GTTCTTGGGAAATCCTCTAGCCACTCCATTGTTTGCAATCCTTTGCACCATGGCTGGCTTCTTCCTGGCGGTCTACATCATCTTGCCTATTGCCTATTGG AGCAATGCTTTCGATTCGAGGAGATTGCCGATGATGTCTCAACAGACTTACGACAGTGCTGGGCAAGTGTATAACATCACTAGGATCATGAACGATAGAG GATTCGACATCGATGTGACGGGATATGAAAGTTACAGCAAGCTCTATCTCAGTGCCACTTTTGTAATCGGACTCGGATTTGGGTTCGCAGCTCTAACGGC TTCTGTTACCCATGTTGCAGTTTTTTATGGACAATCCATCTGGAAACAGTGGAAGAAGACAACAGAAGGAGTGAAAGAGGAAGTTGTGGATGTTCATACG AGAATAATGAAAAAGAACTATCAAGTTGTACCTCAATGGTGGTTCATGGCGATCATGATTGCCTCATTAACAGTCTCTTTTCTTGCCATCGAAGGGTTCG GTCGACAATTACAAATGCCGTGGTGGGCTCTCATTCTGGCTTGTGCTCTTGCATTTTCCTTCACATTGCCTTCTGGGATTATTACTGCTACGACTAATCA GACAATTTCAATAGATATGATGGCGGAGTTGCTGATAGGATACATTTACCCGGGCAAGCCACTAGCTAATGTGACCTTCAAAGCATACAGCTTCGTCAGC ATGGTTCAAGCTTTGAGTTTCTTATCAGACTTCAAATTAGGACACTATATGAAAATCCCTCCAAAATCCATGTTCTTGGTACAGATAATTGGCACAATAG TTGGCTCATCTGCCCAATTCGCAACGACTTGGTGGCTGATATCGAAAATTCCAAACATTTGTGATCTTGAGAAGCTTCCACCGGGGAGTCCATGGACATG TCCTGGATACGATTACTTCTACACCACTTCAATCCTGTGGGGAGTGATAGGTCCTCGCCAAATTCTAGACCACGGAATGTACTCCATAGTGAAGTGGTTC TTCCTCGTTGGCGCGCTGGCCCCTGTCCCGGTATGGATGCTGGCTCGAAAATATCCGGAAAAGAAATGGATTGAGTACATCCACATGCCGGTCTTATTGT CAGGACCCTACTGGTTGCTACCTGCAAGACCAGTCCACTTCTTGTCTTGGGGAGCCGTTGGGGTTTTTTTCAATTACTTCATTTACAGGAAGTATAAAGG ATGGTGGGCTAGACATACTTACATTCTGTCAGCTGCGTTGAATGCTGGTGTTGCTTTCATGGCTGTTATGATTTACTTCACACTTCAGAGAAAGAATATC TATGGGCCAGCTTGGTGGGGTTTGCTAGCTGAAGATCATTGTCCATTGGCCAATTGTCCTACTGTTCCTGGCATTTCCATTGATGGATGTCCAGCAATAA GCTGA
AA sequence Show only first row Show all	>Lus10014885 pacid=23142431 polypeptide=Lus10014885 locus=Lus10014885.g ID=Lus10014885.BGIv1.0 annot-version=v1.0 MVSDESEVNDYEHPVEEVRLTVSTADDPRVPSLTFRTWVLGVISCVFLSFVNQFFSFRSNPLYIDSVSVQIMVLPLGKLMAATLPRKAINVPLTKWKFSM NPGPFNMKEHVLITIFANCGASGALGLTVVTIVKAFYHRGINVWAALFMILTTQSLGYGWAGMFRKYLVDSPHMWWPSNLVQVSLFRALHEKEKREKGGH TRLQFFTLVCVSSFAYYILPGFLFPSLSTISFVCWIWKDSVTAQQIGSGMNGLGVGSFGLDWTTVAGFLGNPLATPLFAILCTMAGFFLAVYIILPIAYW SNAFDSRRLPMMSQQTYDSAGQVYNITRIMNDRGFDIDVTGYESYSKLYLSATFVIGLGFGFAALTASVTHVAVFYGQSIWKQWKKTTEGVKEEVVDVHT RIMKKNYQVVPQWWFMAIMIASLTVSFLAIEGFGRQLQMPWWALILACALAFSFTLPSGIITATTNQTISIDMMAELLIGYIYPGKPLANVTFKAYSFVS MVQALSFLSDFKLGHYMKIPPKSMFLVQIIGTIVGSSAQFATTWWLISKIPNICDLEKLPPGSPWTCPGYDYFYTTSILWGVIGPRQILDHGMYSIVKWF FLVGALAPVPVWMLARKYPEKKWIEYIHMPVLLSGPYWLLPARPVHFLSWGAVGVFFNYFIYRKYKGWWARHTYILSAALNAGVAFMAVMIYFTLQRKNI YGPAWWGLLAEDHCPLANCPTVPGISIDGCPAIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10014885 [exp]	0	1
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10001465 [exp]	1.0	0.8794
AT5G41010		NRPE12, NRPD12,...	DNA directed RNA polymerase, 7...		Lus10030353 [exp]	2.4	0.8360
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10033801 [exp]	4.0	0.7914
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10015595 [exp]	4.6	0.8028
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10003789 [exp]	5.0	0.7782
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10038683 [exp]	10.2	0.7676
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10017777 [exp]	10.4	0.7637
AT3G58480			calmodulin-binding family prot...		Lus10016219 [exp]	13.3	0.7526
AT1G51650			ATP synthase epsilon chain, mi...		Lus10034841 [exp]	13.4	0.7139
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019606 [exp]	13.6	0.7691

Compare expression of checked genes

Lus10014885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.