Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14370 122 / 7e-31 CCT motif family protein (.1) AT1G07050 70 / 7e-14 CCT motif family protein (.1) AT5G57180 72 / 3e-13 CIA2 chloroplast import apparatus 2 (.1.2.3) AT4G25990 70 / 9e-13 CIL CCT motif family protein (.1.2) AT1G73870 67 / 9e-12 CO COL7 B-box type zinc finger protein with CCT domain (.1) AT1G68520 65 / 5e-11 CO COL6 B-box type zinc finger protein with CCT domain (.1) AT1G25440 64 / 9e-11 CO COL16 B-box type zinc finger protein with CCT domain (.1) AT1G49130 61 / 6e-10 CO COL8 B-box type zinc finger protein with CCT domain (.1.2) AT5G24930 54 / 1e-07 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT5G57660 54 / 1e-07 CO COL5, ATCOL5 CONSTANS-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022311 [exp] 426 / 8e-148 AT5G14370 141 / 1e-38 CCT motif family protein (.1) Lus10020012 [exp] 70 / 2e-12 AT5G57180 211 / 2e-60 chloroplast import apparatus 2 (.1.2.3) Lus10041449 [exp] 63 / 2e-10 AT1G25440 288 / 4e-93 B-box type zinc finger protein with CCT domain (.1) Lus10042431 [exp] 54 / 3e-08 AT5G24930 180 / 7e-55 CONSTANS-like 4 (.1) Lus10026238 [exp] 54 / 1e-07 AT5G24930 163 / 9e-48 CONSTANS-like 4 (.1) Lus10020105 [exp] 53 / 3e-07 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10026909 [exp] 52 / 3e-07 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1) Lus10037636 [exp] 51 / 6e-07 AT5G57660 119 / 5e-32 CONSTANS-like 5 (.1) Lus10008879 [exp] 50 / 4e-06 AT5G24470 316 / 4e-98 pseudo-response regulator 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G339200 [exp] 169 / 7e-49 AT5G14370 174 / 5e-52 CCT motif family protein (.1) Potri.001G281700 [exp] 80 / 7e-17 AT1G07050 138 / 8e-41 CCT motif family protein (.1) Potri.009G077100 [exp] 70 / 9e-14 AT1G07050 119 / 3e-34 CCT motif family protein (.1) Potri.018G142100 [exp] 72 / 2e-13 AT5G57180 160 / 5e-44 chloroplast import apparatus 2 (.1.2.3) Potri.006G075200 [exp] 69 / 2e-12 AT5G57180 267 / 5e-85 chloroplast import apparatus 2 (.1.2.3) Potri.015G054600 [exp] 67 / 9e-12 AT1G25440 272 / 2e-87 B-box type zinc finger protein with CCT domain (.1) Potri.010G125100 [exp] 64 / 1e-10 AT1G25440 311 / 3e-102 B-box type zinc finger protein with CCT domain (.1) Potri.008G120400 [exp] 63 / 2e-10 AT1G25440 314 / 2e-103 B-box type zinc finger protein with CCT domain (.1) Potri.018G013800 [exp] 54 / 1e-07 AT5G24930 348 / 2e-118 CONSTANS-like 4 (.1) Potri.006G173600 [exp] 53 / 2e-07 AT5G57660 315 / 1e-105 CONSTANS-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10014886 pacid=23142403 polypeptide=Lus10014886 locus=Lus10014886.g ID=Lus10014886.BGIv1.0 annot-version=v1.0 ATGAGCAGCAGAAGAAAAAAGGCTTCTGTTAAAACTGCAATTAGGGCAGCAGCTTCTTCATCTAGGAAGCAGCCCAGAAGCAAGACTAAGAAGCCCAAGT ATCTTTCCCTCAAGCTCCAACTCAACCACAAAGAACCCGAAATCTCCACCCGACCTGAACCCGCCAACAAGAATGACGACAAGGCGAATAAGAATAAGAA GAAGAAGAAGAAGAGGAAGAGAATGGATTCTTCTTCCCCGTCGCAGAATCAGCTGATCAATCTCTTCCCTCTCCACCCAGAGGAAACCCACCACGATCCT CCCAATGCCGACATTGACGACGAGATTCACGGCGTCCCCGATGATCAAAACGTAGCCATTCTGCTCGAACCCGACGCCGCCGACACCTCAACCTCCCTCC ACGGCCTCCTCGACAGCACCAACACGGCGGCGGCGACGGAGGAGGAGGATCCGAGTTCCCCCAATTACTCTCTGTTCAGAGGAGGAGGAGGGGAATCCCA CTCCCACGGGTTCGGATCTTCGGCGGATTCGAAGTCGTTCGAGGAATCGAGCAGCTGGCTGGTACGGACGGCGATGAGGTGTAGGGAGAGGGATCCGAGT GAGGAGAGGTGGGTGAGTTACTGCCAGGTGGTGGAGGAGCAGCAGCAGCAGAAAAAGAGGAAAAGGAATAATAATTACAAGAAGAAGACGAGGTTAGATC ACGATGAGGTCACCAGCGATCCGTTGGGTGTGCTGCTGATTCAGCAGAAACAGGACAGGAGGAAGCTGGTGGGGTTGAAGCTTGATTATCAGGAGATCTT GGATGCTTGGTCCGATAAAGGATCTTTGTACATAGACAACGACGGAGATCTCCTACCGCCGCCGCCGCCGCCGCAGACGGTTCCCGATTTGCAGGATTCG GATGATCCCTCAAATGGTGGTATGATGGAAGATTGCGAGAACGTGTGGAGAGTGCCGGAAATGGAGGAGGAAGGAACAGGGGAAGGAGAAAGCAGTGCTA GTAAAGAAGGCTACTGCTGGAAACAGAGAGAAGCTAGCGTGTTGAGGTACAAGGAGAAGAGACAGAACCGTCTTTTCGCCAAGCGGATTCGCTATCAAGT CCGGAAGCTCAATGCCGAAAAGCGCCCCCGTTTGAAGGCAGTCGGGTTTAAATGGCTGAACAAAACCCAAGCTGTGGTCCGGCACCGCCGCCGCGGATCC ACCACTCCTCCCACTGCTCTCCTGCCGCGTGATTTTCTGTCGAAGAATTTTCATTCCCAAACGTGGCTATCTGAGCTCATATCGACTCTGGAAAAACTAC CGTCACGACACGAATCCTCTACTGGAACGGCCGGATTCACCAGGTCCGCAGCCGCGACTGTGTCTCTGAACGAAGACTGA
AA sequence Show only first row Show all	>Lus10014886 pacid=23142403 polypeptide=Lus10014886 locus=Lus10014886.g ID=Lus10014886.BGIv1.0 annot-version=v1.0 MSSRRKKASVKTAIRAAASSSRKQPRSKTKKPKYLSLKLQLNHKEPEISTRPEPANKNDDKANKNKKKKKKRKRMDSSSPSQNQLINLFPLHPEETHHDP PNADIDDEIHGVPDDQNVAILLEPDAADTSTSLHGLLDSTNTAAATEEEDPSSPNYSLFRGGGGESHSHGFGSSADSKSFEESSSWLVRTAMRCRERDPS EERWVSYCQVVEEQQQQKKRKRNNNYKKKTRLDHDEVTSDPLGVLLIQQKQDRRKLVGLKLDYQEILDAWSDKGSLYIDNDGDLLPPPPPPQTVPDLQDS DDPSNGGMMEDCENVWRVPEMEEEGTGEGESSASKEGYCWKQREASVLRYKEKRQNRLFAKRIRYQVRKLNAEKRPRLKAVGFKWLNKTQAVVRHRRRGS TTPPTALLPRDFLSKNFHSQTWLSELISTLEKLPSRHESSTGTAGFTRSAAATVSLNED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14370			CCT motif family protein (.1)		Lus10014886 [exp]	0	1
AT5G14370			CCT motif family protein (.1)		Lus10022311 [exp]	1.0	0.9277
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	1.4	0.9064
AT5G40640			unknown protein		Lus10014575 [exp]	1.7	0.8928
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10039715 [exp]	5.2	0.8567
AT2G23610		ATMES3	ARABIDOPSIS THALIANA METHYL ES...		Lus10005400 [exp]	5.7	0.8822
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10028360 [exp]	5.7	0.8510
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10010262 [exp]	6.7	0.8741
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Lus10026815 [exp]	7.7	0.8444
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10027037 [exp]	11.7	0.8313
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038305 [exp]	12.4	0.8620

Compare expression of checked genes

Lus10014886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.