Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27400 580 / 0 Pectin lyase-like superfamily protein (.1) AT4G24780 580 / 0 Pectin lyase-like superfamily protein (.1.2) AT5G63180 578 / 0 Pectin lyase-like superfamily protein (.1) AT1G67750 562 / 0 Pectate lyase family protein (.1) AT4G13710 538 / 0 Pectin lyase-like superfamily protein (.1.2) AT5G48900 520 / 0 Pectin lyase-like superfamily protein (.1) AT3G07010 518 / 0 Pectin lyase-like superfamily protein (.1) AT4G13210 512 / 0 Pectin lyase-like superfamily protein (.1.2) AT1G04680 511 / 0 Pectin lyase-like superfamily protein (.1) AT3G24670 495 / 7e-175 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022310 [exp] 754 / 0 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10033037 [exp] 575 / 0 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011400 [exp] 536 / 0 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10036946 [exp] 532 / 0 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10006456 [exp] 530 / 0 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10023679 [exp] 525 / 0 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10038157 [exp] 523 / 0 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011885 [exp] 517 / 0 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011758 [exp] 517 / 0 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G339500 [exp] 632 / 0 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 591 / 0 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G182200 [exp] 587 / 0 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.012G091500 [exp] 585 / 0 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.010G051800 [exp] 581 / 0 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.001G052300 [exp] 522 / 0 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 513 / 0 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 506 / 3e-179 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 501 / 4e-177 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G122000 [exp] 474 / 1e-165 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10014887 pacid=23142415 polypeptide=Lus10014887 locus=Lus10014887.g ID=Lus10014887.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTTCCGCTCCTCATTCTTGCTCTCTTCTTCTCTTCTCTATACCCACATTTATCATCCGCCACCGTACAAGACCCCGACCTCGTCGTCGAAG ATTTCCACCGAGCAATGAACGCGTCCAGAAGGAAGCTATCCTACTTATCCTGCGGGACAGGCAACCCCATGGACGACTGCTGGAGGTGCAACCCAAACTG GTCAACAAACCGCCAACGCCTAGCCGACTGCGCCATCGGCTTCGGCAAGAACGCCCTCGGCGGCCGAGACGGAAGGATCTACGTCGTCACCGACCCCAAC GACGACGACCCCGTAAGCCCTAGGCCCGGAACCCTACGCCACGCAGTGATCCAGGACGAGCCCCTGTGGATCGTGTTCCAGCGTGACATGGTGATCACTT TAAAACAGGAGCTGGTGATGAACTCTTTCAAGACCATCGACGGGCGTGGGGCCAGCGTCCACGTGGCCGGTGGGCCCTGCATTACGATCCACCACACGAC AAACATCATCATCCACGGGATCAACATCCACGACTGCAAACAAGGAGGCAACGCTAACATACGGGACTCCCCACGCCACTACGGGTGGTGGACCCCATCC GACGGAGACGGGATTTCGGTGTTTGCGAGCAAGAACATCTGGATCGACCATTGTACGATGTCCAACTGTAGGGACGGGTTGATTGACGTCATCCACGGGT CGACCGCCGTCACCATTTCCAACAACCATTTCACGCATCACGACAAAGTGATGCTTTTGGGGCACAAGGACTCGTACACGGAGGATAAGAACATGCAGGT GACGATTGCTTTCAATCATTTCGGGGAAGGTTTGGTTCAGAGGATGCCGAGGTGTAGGAATGGATATTTCCACGTGGTGAATAATGACTACACGCACTGG GAGATGTACGCGATTGGAGGGAGCGCGTCGCCGACTATCAACAGTCAAGGGAATAGGTTCTTGGCGCCTTATGACAGGTCGAAGAAGGAAGTGACCAAGC ATGAGGACGCGCCTGAGAGCGAGTGGAGGAACTGGAACTGGAGGTCTGAGGGCGACTTGCTGTTAAACGGTGCATTTTTCAGACAATCTGGTGCTGGTGA ATTTTCTCATTCTGGAACATATGCAAGAGCTTCTAGCCTGAGTGCTCGCCCGGCTTCTTTCGTCGCCGCCATGACCACCACCGCCGGTGCGCTCTCCTGC CGTAAGGGTTCTCATTGCTGA
AA sequence Show only first row Show all	>Lus10014887 pacid=23142415 polypeptide=Lus10014887 locus=Lus10014887.g ID=Lus10014887.BGIv1.0 annot-version=v1.0 MASLPLLILALFFSSLYPHLSSATVQDPDLVVEDFHRAMNASRRKLSYLSCGTGNPMDDCWRCNPNWSTNRQRLADCAIGFGKNALGGRDGRIYVVTDPN DDDPVSPRPGTLRHAVIQDEPLWIVFQRDMVITLKQELVMNSFKTIDGRGASVHVAGGPCITIHHTTNIIIHGINIHDCKQGGNANIRDSPRHYGWWTPS DGDGISVFASKNIWIDHCTMSNCRDGLIDVIHGSTAVTISNNHFTHHDKVMLLGHKDSYTEDKNMQVTIAFNHFGEGLVQRMPRCRNGYFHVVNNDYTHW EMYAIGGSASPTINSQGNRFLAPYDRSKKEVTKHEDAPESEWRNWNWRSEGDLLLNGAFFRQSGAGEFSHSGTYARASSLSARPASFVAAMTTTAGALSC RKGSHC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63180			Pectin lyase-like superfamily ...		Lus10014887 [exp]	0	1
AT4G09890			Protein of unknown function (D...		Lus10033529 [exp]	1.7	0.8916
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10011141 [exp]	3.5	0.8790
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10035921 [exp]	4.2	0.8815
AT3G19200			unknown protein		Lus10014046 [exp]	9.2	0.8679
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030590 [exp]	10.5	0.8910
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10026376 [exp]	12.5	0.8187
AT2G27550		ATC	centroradialis (.1)		Lus10043385 [exp]	12.6	0.8389
					Lus10005241 [exp]	19.8	0.8419
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10029197 [exp]	21.5	0.8111
					Lus10039418 [exp]	26.3	0.7752

Compare expression of checked genes

Lus10014887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.