Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40610 608 / 0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) AT2G40690 113 / 1e-27 SFD1, GLY1 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) AT2G41540 54 / 9e-08 GPDHC1 6-phosphogluconate dehydrogenase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022308 [exp] 777 / 0 AT5G40610 607 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10029028 [exp] 108 / 5e-26 AT2G40690 625 / 0.0 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10034238 [exp] 97 / 8e-22 AT2G40690 536 / 0.0 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10031052 [exp] 67 / 5e-12 AT2G41540 803 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Lus10035438 [exp] 64 / 8e-11 AT2G41540 800 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Lus10016364 [exp] 56 / 2e-08 AT3G07690 766 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Lus10019761 [exp] 55 / 5e-08 AT3G07690 744 / 0.0 6-phosphogluconate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G070900 [exp] 637 / 0 AT5G40610 613 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Potri.013G090900 [exp] 115 / 3e-28 AT2G40690 612 / 0.0 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Potri.016G043400 [exp] 63 / 9e-11 AT2G41540 815 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Potri.003G203800 [exp] 62 / 2e-10 AT3G07690 768 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.006G046900 [exp] 59 / 2e-09 AT2G41540 820 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [flax] [poplar] 6PGD_C PF07479 [flax] [poplar] NAD_Gly3P_dh_C NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CL0063 [flax] [poplar] NADP_Rossmann PF01210 [flax] [poplar] NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10014889 pacid=23142404 polypeptide=Lus10014889 locus=Lus10014889.g ID=Lus10014889.BGIv1.0 annot-version=v1.0 ATGGCCCCCTCTGCCCCCGAAGATGCTTCCCACGGTCCCACATTGTTCCCCGCCAACTGCAATGGCGGCGGACTAGACGTTTCCCCTGCCCAGAAGTCGA GGGTTACGATTATTGGCAGCGGTAATTGGGGTAGTGTGGCTTCCAAGCTCATTGCTTCCAACACCCTCAACCTCCCTTCTTTCCACGATGAGGTGAGGAT GTGGGTGTTCGAGGAGACATTGCCAAGCGGTGAGAAGCTAACAGATGTCATTAACCGAACCAATGAAAATGTCAAATATCTTCCGGGGATAAAACTTGGG AAGAATGTTATTGCGGACCCGGACCTCGAGAATGCAGTGAGGGAAGCAAACATGTTGGTTTTTGTGACTCCTCACCAGTTCATGGATGGAATATGTAAGA GACTTGTTGGGAAAGTAAAGCAAGGTGCGGAGGCTATTTCACTTATCAAAGGAATGGAGGTCAAAATGGAAGGCCCATGCATGATCTCCACTCTTATCTC TAAGCAGCTTGGTGTAAACTGCTGTGTTCTGATGGGAGCCAATATAGCAAATGAGATTGCCGTTGAGAAATTCAGTGAAGCAACTGTTGGATACAGAGAA AACAGAGAGATTGCGGATAAGTGGGTGCATTTATTTAGCACTCCTTATTTCATGCTCACAGCTATCCAAGATGTAGAGGGAGTTGAGCTATGCGGGACCT TGAAGAATGCTGTAGCTTTGGCCGCAGGTTTCGTTGATGGACTGGAAATGGGGAATAACACAAAGGCAGCGATTATGAGAATCGGTCTGAGGGAGATGAT GGCCTTTTCCAAGAGGTTGTTTCCGACTGTTAAGGACGATACTTTCTTTGAAAGCTGTGGTGTGGCTGATCTGATCACAACATGCTTGGGGGGAAGAAAC AGGAAAGTTGCAGAAGCTTTTGCCAAAAATGGTGGGAAAAGGTCCTTTGATGAGCTAGAGGCAGAAATGTTACAGGGTCAGAAGCTACAGGGCGTTTCAA CGGCAAGAGAGGTGTATGAAGTTATGTCGAACCGTGGATGGCTAGAGATGTTCCCACTTTTGTCAGCAGTACATGAGATTAGCAGCGGCCGCCTTCCACC ATCTGCCATAGTCGAGTATGGAGAGCGCAAGCCAAAATTCTCTTGCTGA
AA sequence Show only first row Show all	>Lus10014889 pacid=23142404 polypeptide=Lus10014889 locus=Lus10014889.g ID=Lus10014889.BGIv1.0 annot-version=v1.0 MAPSAPEDASHGPTLFPANCNGGGLDVSPAQKSRVTIIGSGNWGSVASKLIASNTLNLPSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLG KNVIADPDLENAVREANMLVFVTPHQFMDGICKRLVGKVKQGAEAISLIKGMEVKMEGPCMISTLISKQLGVNCCVLMGANIANEIAVEKFSEATVGYRE NREIADKWVHLFSTPYFMLTAIQDVEGVELCGTLKNAVALAAGFVDGLEMGNNTKAAIMRIGLREMMAFSKRLFPTVKDDTFFESCGVADLITTCLGGRN RKVAEAFAKNGGKRSFDELEAEMLQGQKLQGVSTAREVYEVMSNRGWLEMFPLLSAVHEISSGRLPPSAIVEYGERKPKFSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10014889 [exp]	0	1
AT1G06930			unknown protein		Lus10025251 [exp]	1.0	0.8801
AT5G06410			DNAJ heat shock N-terminal dom...		Lus10016189 [exp]	7.3	0.7765
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Lus10027399 [exp]	9.4	0.7808
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10006391 [exp]	9.8	0.8368
AT5G06750			Protein phosphatase 2C family ...		Lus10021056 [exp]	10.5	0.8141
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10043257 [exp]	13.3	0.8417
AT2G19580		TET2	tetraspanin2 (.1)		Lus10007998 [exp]	14.1	0.7940
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10034886 [exp]	17.7	0.8180
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10025912 [exp]	21.7	0.8230
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028196 [exp]	22.6	0.8221

Compare expression of checked genes

Lus10014889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.