Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01690 219 / 1e-70 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 207 / 7e-66 alpha/beta-Hydrolases superfamily protein (.1) AT4G24760 198 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1) AT3G30380 175 / 3e-53 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38220 131 / 9e-37 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 127 / 7e-36 alpha/beta-Hydrolases superfamily protein (.1) AT4G31020 125 / 1e-34 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G13610 124 / 1e-34 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 119 / 2e-32 alpha/beta-Hydrolases superfamily protein (.1) AT1G32190 108 / 4e-28 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000544 [exp] 397 / 4e-140 AT3G01690 488 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10022307 [exp] 394 / 1e-138 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10042075 [exp] 249 / 4e-82 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018081 [exp] 249 / 7e-77 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10031953 [exp] 178 / 3e-54 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035148 [exp] 178 / 3e-54 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040038 [exp] 129 / 4e-36 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10019604 [exp] 127 / 3e-35 AT4G31020 487 / 9e-176 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017617 [exp] 127 / 5e-35 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G340000 [exp] 321 / 3e-110 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 253 / 1e-83 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 231 / 4e-75 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G112300 [exp] 184 / 3e-56 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G136900 [exp] 182 / 1e-55 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 179 / 1e-54 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 178 / 4e-54 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G117633 [exp] 139 / 1e-39 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.004G097300 [exp] 139 / 1e-39 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.018G111400 [exp] 127 / 2e-35 AT4G31020 447 / 4e-160 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014890 pacid=23142441 polypeptide=Lus10014890 locus=Lus10014890.g ID=Lus10014890.BGIv1.0 annot-version=v1.0 ATGCTTGGTCAGGTTGGAACTATTAGAGCGAGCAAGAGAGCCCGACTCACTTATTCTATACCCACCACCACTGCTGTTCTTTTCTTTTTGGTTTATCAGA ATATCGACAAGATTCAACTAGTTGATTCTCCTGTTCTTGTGATTCATGGAACTGCAGACGAAGTTGTGGATTGGTCTCATGGGAAGCAACTATGGGAACT CTGCAAACAGAAGTATGAACCACTTTGGGTCAAAGGAGGGAGCCACTGTGATGTAGAGCACCATCCAGAGTACATCAGGCATCTCAAGAAGTTCATATCA ACCGTCGAGAAATCTCCTTCTCAAAGGTTCATCAGTTCAAGGAGGAGCACAGACCAGTTCGAGCAGCCACGAAAGAGTACAGATGTCTACGAGACTTCAT CGAGGAAAAGCACTGACCGGAGAGAGAAACCGAGACACAGCACAGACAGGGCCGAGAAGTTGAAGAAGAACCAATCATCGAACTATGCAGAGAAGTTGGA GAAGCTTAAGAGCCAGGCCAGTGCTGCTGAGAAACTGGAGAAGCTGAGGATCTCATTTGATCAAATGGAGAGGTCTAGGAGGAGTGTTGACTGCCATGAG AAATCCAGGAAAAGCGTTGACCACCAACTGGAACGTGCAAGGAAAAGTGTTGACCGGTTGGACAGAATACGGACTGGTTGA
AA sequence Show only first row Show all	>Lus10014890 pacid=23142441 polypeptide=Lus10014890 locus=Lus10014890.g ID=Lus10014890.BGIv1.0 annot-version=v1.0 MLGQVGTIRASKRARLTYSIPTTTAVLFFLVYQNIDKIQLVDSPVLVIHGTADEVVDWSHGKQLWELCKQKYEPLWVKGGSHCDVEHHPEYIRHLKKFIS TVEKSPSQRFISSRRSTDQFEQPRKSTDVYETSSRKSTDRREKPRHSTDRAEKLKKNQSSNYAEKLEKLKSQASAAEKLEKLRISFDQMERSRRSVDCHE KSRKSVDHQLERARKSVDRLDRIRTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01690			alpha/beta-Hydrolases superfam...		Lus10014890 [exp]	0	1
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10033268 [exp]	2.4	0.8699
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10032079 [exp]	3.7	0.8627
AT3G46600	GRAS		GRAS family transcription fact...		Lus10040789 [exp]	4.9	0.8513
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10015172 [exp]	6.0	0.8591
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10037601 [exp]	6.5	0.8751
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	13.3	0.8725
AT1G01490			Heavy metal transport/detoxifi...		Lus10007911 [exp]	16.7	0.8613
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004674 [exp]	23.9	0.8672
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Lus10003714 [exp]	25.2	0.8645
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10020019 [exp]	25.3	0.8673

Compare expression of checked genes

Lus10014890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.