Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55470 517 / 0 ATNHX3 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) AT5G27150 441 / 1e-151 AT-NHX1, ATNHX1, NHX1 Na+/H+ exchanger 1, Na+/H+ exchanger 1 (.1) AT3G05030 437 / 4e-150 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.1.2) AT3G06370 430 / 5e-148 ATNHX4, NHX4 sodium hydrogen exchanger 4 (.1) AT1G79610 139 / 4e-36 ATNHX6 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) AT1G54370 120 / 2e-29 NHX5, ATNHX5 NA+/H+ ANTIPORTER 5, sodium hydrogen exchanger 5 (.1) AT2G01980 46 / 5e-05 ATSOS1, SOS1, ATNHX7 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016583 [exp] 653 / 0 AT5G55470 764 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10004141 [exp] 434 / 5e-149 AT3G05030 846 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10033840 [exp] 432 / 2e-148 AT3G05030 854 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10012801 [exp] 429 / 7e-147 AT3G05030 790 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10040903 [exp] 419 / 4e-143 AT3G05030 769 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10005934 [exp] 419 / 8e-140 AT3G05030 768 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10001718 [exp] 374 / 1e-122 AT3G05030 748 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10018989 [exp] 362 / 3e-117 AT3G05030 750 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10038727 [exp] 109 / 2e-25 AT1G79610 749 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045100 [exp] 442 / 2e-152 AT3G05030 840 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.010G031500 [exp] 439 / 2e-151 AT3G05030 792 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G026600 [exp] 436 / 2e-149 AT3G05030 548 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G031700 [exp] 428 / 8e-147 AT3G05030 834 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.014G134900 [exp] 427 / 1e-146 AT3G05030 707 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.016G000200 [exp] 117 / 2e-28 AT1G79610 724 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10014891 pacid=23142444 polypeptide=Lus10014891 locus=Lus10014891.g ID=Lus10014891.BGIv1.0 annot-version=v1.0 ATGCAACAGATGATGGAGAAGATATTATTGGTTAACCAGATAAAGATGTGGGAAAATGTGTCACCAGAACACAAACAAGTGATCCCAATGACGATATTCG TGGCAGTGCGATGCCTCTGCTTTGTGGTTGGCCATTTGCTTGAAGAGAATCGTTGGGTTAACGAGCCCATCACTGCCATCTTCATCGGATTTGTTACTGG AATCTTGATATTGGCACTCAGGAAGGGTGAAAGTTCTCACCTTTTGAAGTTCAGTGAAGAGCTCTTCTTCATTTACCTCCTTCCACCCATAATTTTCAAT GCAGGATTTCAGGTGAAGAAGAAGCATTTCTTTCAGAACTTTGTAACCATAATGTTGTTTGGGATCGTTGGGGTTTTCATCTCCACTATCATTATCTCCC TAGGCAGCTGGTGGCCGTTTCCCAAGCTAGGATTCCTTGGCCTCACTCCACGAGATTACCTGGCTGTAGGAACCATATCCTCATCCACTGATACAGTGTG CACGCTACAGGTTCTGCACCAAGATGAGACTCCTTTACTATACAGCATAGTGTTTGGGGAAGGAGTAGTGAGCGATGCACCATCAGTTGTTCTGTTCAAT GCTATTCAGAAGATGGATGTTAGCAAATCAACTCTCACACTATCCTTGGTGTCATTGCAGATTTCTTTTACTTGTTCTCAACCAGCACTGCTCTCGGGAT TGTTGTCAGTTGGTCTTCTGACTGCCTTTCTCCTCAAACGGCTCTATTTTGGCAAACATTCAAGCATACGTGAGCTTGGCTTGATGGTTTTAATGGCTTA CCTCTCATACATGCTCGCCGAGCTGCTGGAGCTAAGTGGAATTCTTACTGTTTTCTTTTGTGGAATTATCATGTCGCATTATTCTTGGCACAATGTGACT GAGAGCTCCAGGATCACAGCCAGGCATGTTTTTGCTATGTTGTCTTTTGTTGCGGAAACTTTCATATTCCTTTATGTGGGGATGGATGCTCTCGACAGTG AGAAGTGGAAGATGACTAAACTCAGAAAGAAGAGAATACATCCTGTGCAGGTTGTCATTTGGTGGGCTGGTCTCATGAGAGGGGCAGTCTCCATCGCTCT GGCTTTTAAGCAGTTCACTTATTCTGTTGTTACGTGGGATCCAATCAACGCAACAATGATCACCAACACCATTATAGTTGTCCTCTTCACTACACTGGTA CATGAGCATATATTGCAGCTGTTTTCCATGAAGAGTGTGTTTATGTGTAGTAATTGA
AA sequence Show only first row Show all	>Lus10014891 pacid=23142444 polypeptide=Lus10014891 locus=Lus10014891.g ID=Lus10014891.BGIv1.0 annot-version=v1.0 MQQMMEKILLVNQIKMWENVSPEHKQVIPMTIFVAVRCLCFVVGHLLEENRWVNEPITAIFIGFVTGILILALRKGESSHLLKFSEELFFIYLLPPIIFN AGFQVKKKHFFQNFVTIMLFGIVGVFISTIIISLGSWWPFPKLGFLGLTPRDYLAVGTISSSTDTVCTLQVLHQDETPLLYSIVFGEGVVSDAPSVVLFN AIQKMDVSKSTLTLSLVSLQISFTCSQPALLSGLLSVGLLTAFLLKRLYFGKHSSIRELGLMVLMAYLSYMLAELLELSGILTVFFCGIIMSHYSWHNVT ESSRITARHVFAMLSFVAETFIFLYVGMDALDSEKWKMTKLRKKRIHPVQVVIWWAGLMRGAVSIALAFKQFTYSVVTWDPINATMITNTIIVVLFTTLV HEHILQLFSMKSVFMCSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55470		ATNHX3	Na+/H+ \(sodium hydrogen\) exc...		Lus10014891 [exp]	0	1
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10025110 [exp]	1.7	0.8465
AT2G23140			RING/U-box superfamily protein...		Lus10024899 [exp]	4.5	0.8397
AT3G55060			unknown protein		Lus10030304 [exp]	6.0	0.8547
AT2G23140			RING/U-box superfamily protein...		Lus10022919 [exp]	9.7	0.8320
AT5G50150			Protein of Unknown Function (D...		Lus10042092 [exp]	12.2	0.8286
AT2G40820			unknown protein		Lus10027293 [exp]	13.3	0.8218
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10040595 [exp]	15.7	0.8066
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10041875 [exp]	15.9	0.8183
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Lus10038534 [exp]	16.7	0.8477
AT5G07940			unknown protein		Lus10034693 [exp]	17.0	0.7966

Compare expression of checked genes

Lus10014891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.