Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26700 921 / 0 ATFIM1 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) AT5G35700 913 / 0 FIM2, FIM5 FIMBRIN5, fimbrin-like protein 2 (.1) AT5G55400 905 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1) AT2G04750 865 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1) AT5G48460 833 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016580 [exp] 1255 / 0 AT4G26700 986 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Lus10038235 [exp] 827 / 0 AT5G48460 1068 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1) Lus10025865 [exp] 824 / 0 AT5G48460 1013 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1) Lus10012361 [exp] 733 / 0 AT5G35700 843 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1) Lus10006407 [exp] 402 / 3e-132 AT5G35700 842 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360100 [exp] 1043 / 0 AT4G26700 1019 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Potri.011G086500 [exp] 1037 / 0 AT4G26700 1025 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Potri.014G163100 [exp] 907 / 0 AT5G35700 1028 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1) Potri.002G251600 [exp] 864 / 0 AT5G48460 1108 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10014894 pacid=23142399 polypeptide=Lus10014894 locus=Lus10014894.g ID=Lus10014894.BGIv1.0 annot-version=v1.0 ATGTATACGTCGGTAAAGAATGCAAAAGGCAAAGTTACAGTTGGAGATCTACCATCTTTGTTGGTGACGATGAAAGCATTTGCCTCAACGTGCAAGGAGG ATGAGATTTCAGCTCTATTGGCTCAATCCTTTCCCGATTTCACTGTCGATATAGACTTCGAAGGCTTTCTCAGGGTATACTCGAGTTTGCAAGGTCAAGC TCACGCAAAATCAGGGAATTCAAAAGGAGCCTCATCATTCCTCAAGGCCTCAGTAACAACTTTACTTCACACTATTAGTCAGTCAGAGCGAGCATTATAT GTAGCTCACATTAACAGTTATCTTGAGGACGACCCATTTCTGAAGCAGTTTCTTCCCTTGGGTACATCACCTAATGATTTGTTTGACCTTGCAAAGGACG GAGTTCTTCTTTGTAAGCTTATCAATGTTGCTGTGCCTGGGACAATCGATGAACGGGCTATCAATTGTAAACGGGTTCTTAACCTGTGGGAGAGGAATGA GAACCACACCCTTTGCCTCAACTCTGCAAAGGCTATTGGGTGCACAGTAGTTAATATTGGTGCACAGGACTTGGTGGAAGCTAGACCTCATCTGGTGCTT GGTTTAATTTCTCAGATCATAAAGATTCAATTGCTAGCAGATCTCAACCTCAAGAAAACACCTCAGCTCGTGGAATTGGTGGAGGACAACACTGATGTTG AGGAACTTATGAGCTTGGCTCCTGAAAAACTGTTACTGAAGTGGATGAATTTCCATCTAAGCAAAGCAGGATACGAAAAACGTGTTACAAACTTCTCTTC CGATTTGAAGGATGGAAAGGCATATGCCTACCTGCTTAATGTTCTTGCACCAGAGCACTGCAATCCAGATACATTGGATGCACCAAACCCGCTTGAGAGG GCTACACTAGTACTTGACCATGCAGAGAAAATGGGCTGTAAGCGGTATCTAAAACCATCAGACATTGTTGAAGGCTCATCCAATCTGAATCTTGCATTCA TTGCTCAAATATTTCACCGAAGGAGTGGCTTGAGTACAGATGCCAAAAAGTATGCTTTTGCAGAGATGATGACTGATGATGTACAAACATCAAGAGAAGA GAGATGCTTTAGATTGTGGATCAATAGTCTTAACGCTAGCTATTGTAACAACGTGTTTGAGGATGTTAGGAATGGATGGATACTTCTTGAAGTACTTGAT AAGATTAGCCCTGGATCAGTTAACTGGAAGCATGCAACAAAACCTCCCATAAAAATGCCATTCAGGAAGGTTGAAAATTGCAATCAGGTGATAAAGATTG GGAGACAGTTGAGATTCTCTCTTGTTAATGTTGCTGGGAATGATATTGTCCAAGGAAATAAGAAACTCATTTTGGCTTTCTTGTGGCAGTTGATGAGATA TTCCATGCTTCAACTTCTGAAAAATTTAAGATCGCACTCCCAAGGAAAGGAAGTAACTGATGCAGATATCTTGCATTGGGTTAACAAGAAAGTTCGAAGT ATGGGCAGGACATCTCGAATCGAGAACTTTAAGGATAAGAGCATTTCAAATGGTAGATTCTTACTTGAGCTTCTCAGTTCCGTGGAACCAAGAGTGGTAA ACTGGAACCTGGTCACCAAGGGTGAAAGTGAGGATGAGAAGAGGCTGAATGCTACATACATAATCAGTGTGGCCAGGAAGCTCGGCTGTTCGATTTTCTT GTTGCCGGAGGATATCATGGAGGTAAACCAGAAGATGATTCTTACGCTAGCCGCGAGCATAATGTACTGGAGCCTTCAAAAAGCAGTGGAAGATGGGGAA CCTTTATCTCCAGTTCCTTCCAGTTGCAACACATGTAACGCTACCCCTGAGGCATCACCTGCGCCTTCCGTTTGCGGTGAGGATGAAAGCTCCTCCATCT CTGGTGATGTCTCAAGTTTAATCATTGACGATGCAGCCTCAGATACCACAGTTTCCTCCTCGCATCTCGACAACGAGGAAACTTGTGCAGGAGAGTGA
AA sequence Show only first row Show all	>Lus10014894 pacid=23142399 polypeptide=Lus10014894 locus=Lus10014894.g ID=Lus10014894.BGIv1.0 annot-version=v1.0 MYTSVKNAKGKVTVGDLPSLLVTMKAFASTCKEDEISALLAQSFPDFTVDIDFEGFLRVYSSLQGQAHAKSGNSKGASSFLKASVTTLLHTISQSERALY VAHINSYLEDDPFLKQFLPLGTSPNDLFDLAKDGVLLCKLINVAVPGTIDERAINCKRVLNLWERNENHTLCLNSAKAIGCTVVNIGAQDLVEARPHLVL GLISQIIKIQLLADLNLKKTPQLVELVEDNTDVEELMSLAPEKLLLKWMNFHLSKAGYEKRVTNFSSDLKDGKAYAYLLNVLAPEHCNPDTLDAPNPLER ATLVLDHAEKMGCKRYLKPSDIVEGSSNLNLAFIAQIFHRRSGLSTDAKKYAFAEMMTDDVQTSREERCFRLWINSLNASYCNNVFEDVRNGWILLEVLD KISPGSVNWKHATKPPIKMPFRKVENCNQVIKIGRQLRFSLVNVAGNDIVQGNKKLILAFLWQLMRYSMLQLLKNLRSHSQGKEVTDADILHWVNKKVRS MGRTSRIENFKDKSISNGRFLLELLSSVEPRVVNWNLVTKGESEDEKRLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLAASIMYWSLQKAVEDGE PLSPVPSSCNTCNATPEASPAPSVCGEDESSSISGDVSSLIIDDAASDTTVSSSHLDNEETCAGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10014894 [exp]	0	1
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Lus10004802 [exp]	1.0	0.8466
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10031106 [exp]	2.4	0.8376
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10003172 [exp]	4.5	0.8222
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10038176 [exp]	4.9	0.8278
AT1G28240			Protein of unknown function (D...		Lus10015438 [exp]	6.2	0.8393
AT1G06470			Nucleotide/sugar transporter f...		Lus10031370 [exp]	8.5	0.8067
AT2G43240			Nucleotide-sugar transporter f...		Lus10025486 [exp]	13.0	0.7899
AT1G04200			unknown protein		Lus10039377 [exp]	13.4	0.7865
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034701 [exp]	13.4	0.7161
AT1G74300			alpha/beta-Hydrolases superfam...		Lus10028853 [exp]	15.7	0.8014

Compare expression of checked genes

Lus10014894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.