Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59410 462 / 4e-153 ATGCN2, GCN2 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) AT3G02760 72 / 2e-13 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030341 [exp] 74 / 4e-14 AT3G02760 972 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1) Lus10041073 [exp] 73 / 1e-13 AT3G02760 973 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G128300 [exp] 531 / 2e-179 AT3G59410 1610 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) Potri.019G071400 [exp] 75 / 2e-14 AT3G02760 879 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF03129 [flax] [poplar] HGTP_anticodon Anticodon binding domain
Representative CDS sequence Show only first row Show all	>Lus10014895 pacid=23142421 polypeptide=Lus10014895 locus=Lus10014895.g ID=Lus10014895.BGIv1.0 annot-version=v1.0 ATGGGGAGCATTTTGACCTATATGACTGGTGACTTCGACATTGTTGGGGGTGCATCAGCATTGACAGAGGCAGAGATTATCAAAGTGACAATAGACACGT TGACTCCTTTTTTTCTGTCTGATGGATGTGATATTCATCTGAATCATGGTGATTTGCTAGATGCTATCTGGTCATGGGTTGGAATTAAACCAGAGTATAG GCAGAAAGTGGGGGAGCTTCTTTCAATGATGGCCTCCTTGCGTCCTCAATCATCTGAACGGAAGTTAAAATGGGTAGTTATACGTCGTCAATTGTTACAG GAACTACATTTGCAGGAAGCTGTTGTGGATAGACTGCAGACTGTTGGCTTAAGGTTCTGTGGTCCTGTAGATCAGGCACTTCCTCGATTAAGAGGAGCCC TGCTGGCTGATAAAGTAACACGGAGGGCGCTTGATAATCTGTTGGATCTTTTCATCCACTTGAGAGTTTGGAAGATAGAAAGTCGTGTTTACATCGATCC ATTAATGCCTCCAACAGAGAAGTACCACAGGAACTTGTTTTTCCAGGTGTATCTGATGAAGGACAACAATCCTTCTTCACTTGGAGAAGGTCTTTTGCTT GCGGTTGGTGGTCGATATGATTACTTGCTTCGCCAGATGTGGAGTCATGGATCTAGAAGCAACCCTCCGGGTGCCGTTGGAACCAGCCTTGCGTTAGAAA CCATAATTTTACATGCTTCTGGGGATATCAAACCTATAAGAAATGAAGCAAGCACAAGTGTTCTGGTTTGCTCAAGAGGGGGAGGTGGGTTGTTGGTTGA GCGCATGGAACTAGTTGCCGAATTGTGGGAAGAGAATATCAAGGCTGAGTTTGTCCCAACGCCAGATCCAAGCCTTACAGAGCAATACGAATATGCCAAT GAGCATGACATAAGATGCCTTGTGATTATTACCGACGTGAGTGTGTCTCAGACAGGTATTGTGAAGGTTCGTCATCTCGAGCTTAAGAAGGAGAAGGAAG TGGAAAGAGAAACGCTTGTGAGGTTTTTGTTGGATGCAATGGCAACCCAGTTTAGGAACCCTTCTATTTGGAACTAG
AA sequence Show only first row Show all	>Lus10014895 pacid=23142421 polypeptide=Lus10014895 locus=Lus10014895.g ID=Lus10014895.BGIv1.0 annot-version=v1.0 MGSILTYMTGDFDIVGGASALTEAEIIKVTIDTLTPFFLSDGCDIHLNHGDLLDAIWSWVGIKPEYRQKVGELLSMMASLRPQSSERKLKWVVIRRQLLQ ELHLQEAVVDRLQTVGLRFCGPVDQALPRLRGALLADKVTRRALDNLLDLFIHLRVWKIESRVYIDPLMPPTEKYHRNLFFQVYLMKDNNPSSLGEGLLL AVGGRYDYLLRQMWSHGSRSNPPGAVGTSLALETIILHASGDIKPIRNEASTSVLVCSRGGGGLLVERMELVAELWEENIKAEFVPTPDPSLTEQYEYAN EHDIRCLVIITDVSVSQTGIVKVRHLELKKEKEVERETLVRFLLDAMATQFRNPSIWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014895 [exp]	0	1
AT1G09920			TRAF-type zinc finger-related ...		Lus10042917 [exp]	8.7	0.8561
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	11.0	0.8893
AT3G26850			histone-lysine N-methyltransfe...		Lus10002082 [exp]	11.1	0.8816
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10025420 [exp]	14.3	0.8777
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10027994 [exp]	19.7	0.8649
AT5G19830			Peptidyl-tRNA hydrolase family...		Lus10014589 [exp]	25.3	0.8518
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10012040 [exp]	27.3	0.8580
AT1G71110			unknown protein		Lus10013492 [exp]	28.0	0.8609
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10006828 [exp]	31.9	0.8684
AT2G44270		ROL5	repressor of lrx1 (.1.2)		Lus10009739 [exp]	34.4	0.8711

Compare expression of checked genes

Lus10014895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.