Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59410 432 / 5e-141 ATGCN2, GCN2 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) AT1G49180 65 / 3e-11 protein kinase family protein (.1.2) AT5G58380 61 / 9e-10 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT4G14780 59 / 3e-09 Protein kinase superfamily protein (.1) AT3G13690 58 / 7e-09 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G48750 57 / 9e-09 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT2G25090 57 / 1e-08 CIPK16, SnRK3.18 SNF1-RELATED PROTEIN KINASE 3.18, CBL-interacting protein kinase 16 (.1) AT5G61560 57 / 2e-08 U-box domain-containing protein kinase family protein (.1.2) AT5G45820 56 / 3e-08 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT1G55200 56 / 3e-08 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026461 [exp] 61 / 5e-10 AT4G35780 179 / 7e-51 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10025010 [exp] 61 / 6e-10 AT4G35780 178 / 1e-49 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10022748 [exp] 60 / 1e-09 AT2G30360 491 / 3e-173 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10042560 [exp] 59 / 1e-09 AT1G08650 344 / 1e-119 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10041653 [exp] 58 / 4e-09 AT5G10930 490 / 1e-173 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Lus10022227 [exp] 58 / 6e-09 AT3G01490 665 / 0.0 Protein kinase superfamily protein (.1) Lus10011301 [exp] 58 / 8e-09 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10012949 [exp] 58 / 1e-08 AT5G25930 910 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10034978 [exp] 57 / 1e-08 AT5G25930 927 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G128300 [exp] 504 / 2e-168 AT3G59410 1610 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) Potri.006G222600 [exp] 62 / 3e-10 AT4G35780 175 / 1e-48 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.019G018100 [exp] 58 / 3e-09 AT3G04530 379 / 2e-133 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.013G046100 [exp] 57 / 4e-09 AT3G04530 366 / 1e-128 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.010G071400 [exp] 57 / 5e-09 AT1G08650 298 / 1e-101 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.002G049700 [exp] 56 / 3e-08 AT3G22750 600 / 0.0 Protein kinase superfamily protein (.1) Potri.019G128100 [exp] 56 / 3e-08 AT2G30360 531 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Potri.008G166500 [exp] 55 / 3e-08 AT1G08650 287 / 2e-97 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.018G088200 [exp] 56 / 4e-08 AT5G25930 885 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.001G351300 [exp] 55 / 4e-08 AT3G01490 664 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10014896 pacid=23142445 polypeptide=Lus10014896 locus=Lus10014896.g ID=Lus10014896.BGIv1.0 annot-version=v1.0 ATGCCTTCATTTCACTCAGAGCAAGGACATTATCCAGTAGCGTGGTTTGAAACAGGAGTGGTTGGTTCCGTTGATGATATTGGTTCTGGTTCTAGTACTG CAGCTAGCTCAACATTTAGTAGACATGGTGCAAGTACTACTAATGTTGGGCAGGATTCTACGCTTGAATCAACTTACCTTTATATACAAATGGAATATTG CCCAAGGACCCTTAGACAGGTTTTTGAGTCGTACAACAATTTTGATAAGGACTTAGCTTGGCATTGGTTTCGGCAAATTGTGGAGGGGATATCACACATT CACGGGCAGGGAATTATCCATCGAGACTTGACTCCAAATAACATTTTTTTCGATGCAAGGAATGAAGTAAAAATTGGTGATTTTGGCCTTGCCAAGTTCC TAATGTTGGAACAGCTGGATCCTGAGGCAGTTCTTCCTTTGGATCCTACCACTGGAGTGTCAGTTGATGGCACTGGTCAAATCGGAACATACTTTTACAC TGCACCTGAAATTGAGCAAGGCTGGCCAAAAATAAATGAAAAGGTGGACATGTACAGTCTAGGAATCGTATTTTTTGAGCTTTGGCATCCTTTTGGGACA TCTATGGAGAGAAATATCCTTCTATCCGATCTGAAACTGAAGGGTGATTTTCCTCCCTCGTGGGTTGCTCAATTTCCAGAACAGACATCGTTGTTGCTGC GTTTAATATCTCCGAGTCCCTCTGAACGTCCATCTGCGACAGATCTCCTAAAGCATTCTTTCCCTCCACGAATGGAATCTGAATTATTAGATAGTGTTCT ACGAACAATGCATAGCTCCGAGGACAGAACTGTGTATGATAAAATTGTTGGTGCCATCTTTGAAGAAGAAATGATAAGCATGAGAAGCAGTAACCAACTG GCCGGTACCTCGAGAAATAGCAGAGATTCAACTCCATCCATCCACTATGTGGATGCTGTGACTGAAATCCGTGATTATGTGTTTGAGACGACAAGGGAAG TTTTCAAACTTCATTGTGCAAAGCATTTTGAAATTACACCCCTAAGTTTGCTTGATGATCCTCTGGAGCTTAATAGAAGAAGCATGGTCAAGCTTTTGTC GCATGGAGGTGATTTGCTTGGACTTTGTCATGAGCTACGTGTTCCTTTTGCTAGCTGGCTCATTGCAAACCAGAAAATGTTAACAGTTGAAGTGTATCCG TAA
AA sequence Show only first row Show all	>Lus10014896 pacid=23142445 polypeptide=Lus10014896 locus=Lus10014896.g ID=Lus10014896.BGIv1.0 annot-version=v1.0 MPSFHSEQGHYPVAWFETGVVGSVDDIGSGSSTAASSTFSRHGASTTNVGQDSTLESTYLYIQMEYCPRTLRQVFESYNNFDKDLAWHWFRQIVEGISHI HGQGIIHRDLTPNNIFFDARNEVKIGDFGLAKFLMLEQLDPEAVLPLDPTTGVSVDGTGQIGTYFYTAPEIEQGWPKINEKVDMYSLGIVFFELWHPFGT SMERNILLSDLKLKGDFPPSWVAQFPEQTSLLLRLISPSPSERPSATDLLKHSFPPRMESELLDSVLRTMHSSEDRTVYDKIVGAIFEEEMISMRSSNQL AGTSRNSRDSTPSIHYVDAVTEIRDYVFETTREVFKLHCAKHFEITPLSLLDDPLELNRRSMVKLLSHGGDLLGLCHELRVPFASWLIANQKMLTVEVYP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014896 [exp]	0	1
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10037968 [exp]	2.4	0.9194
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	2.4	0.9195
AT5G36930			Disease resistance protein (TI...		Lus10011741 [exp]	4.2	0.9154
AT5G06120			ARM repeat superfamily protein...		Lus10041603 [exp]	4.5	0.9137
AT1G16800			P-loop containing nucleoside t...		Lus10037303 [exp]	5.8	0.8937
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	6.0	0.9151
AT3G58560			DNAse I-like superfamily prote...		Lus10012293 [exp]	6.0	0.8931
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10003572 [exp]	6.9	0.9088
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	7.9	0.9042
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10016683 [exp]	8.0	0.8960

Compare expression of checked genes

Lus10014896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.