Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59410 390 / 4e-124 ATGCN2, GCN2 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) AT4G33080 43 / 0.0004 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT4G09012 41 / 0.0005 Mitochondrial ribosomal protein L27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G128300 [exp] 478 / 2e-157 AT3G59410 1610 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) Potri.006G224800 [exp] 44 / 0.0002 AT4G33080 832 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF05773 [flax] [poplar] RWD RWD domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10014897 pacid=23142429 polypeptide=Lus10014897 locus=Lus10014897.g ID=Lus10014897.BGIv1.0 annot-version=v1.0 ATGGGGCATAGTTCGAAGAAGAAGAAGACGAAGAAAGGAGGGAGCGGGAGGCGGAACAAAGACCACTCTTCTACTTCCGCTGATGGCAATGAGCTTCTTT CTGAGGAGATTACTGCCTTGAGTGCAATTTTCCAAGAAGATTGCAAGATTGTAACGGGACCACCAACTCAGATCATCATAAAGATCAGTCCTCATTCCAA AGATATGGGCTTCGAGGATTTAGACATCTCAGCTCAGCTCTCAGTCAGATGTTTACCGGGATATCCTTACAAGTCCCCTAAACTGAAGATTACTCCAGAA AAAGGGTTAACAGAAAATGATCTGGAGAGTCTTTTGTCTCTTCTTCAAGAACAGGCGAGCTCAAATGCTCGGGAGGGAAGAGTAATGATTTTCAATCTGG TGGAGGCTGCTCAGGAGTTCCTCTCTCAAATTGTTCCACCTGAGCCAGAATCTAAGTCTGTGTCGTGCTCAACTGTGGATAGCGCCAGCCAATTGTTTCA GAAGGAACTTTTGGTTTCCGATGATAAGAACTGCTCCTCTACAGGGCTGTATGTTTATGGTTTTCTAGACCTCTTCAGTGGTTCAGGGGAGTCATGGTGT TGGGGTTTGCCGCTGGATGATAACAGAGTGATAAAATCATTATCTTCTGATGCTTCAAACGTCAAATCTGATGTATCAGGAGTAAAACTGGACAAGACTG AACCAACAACAGATCAGACTAAAAAGCAAGGCCCGTTTCCTGGTCCCAACACCATGTTAGATATTCTTGAAGAGGAGAGTGAAGATGGCAATAATAGCGA TTTTAATACTGATACGAGAAGCTCTGTAAATGATCAATTGGTAGGGCATGAGAGGGAAGGAAAGAATGAGGATAGCTCTGACTCAGAGCAAGTATCAGTA GACAGCAGTGATAAGTCTGAATATGATCAGCGGAAATCTGTATCTTTCATCTCCTTCGACCATGATTCCGCATCTCAATCTATTGAAAAGGAACTCATAA TGGTCCACCTACTTCGTCTTGCCTCGTCTTCAAAAGGGCTTCTTCCCGTGGATGGGTTTCCTAATATAATTTCTGAGCTCTGCAATCTAGGTGTTTTATC AGAGAAGATGCAAGAATTTGCTACAAGACCATCTTCGATATTTGCCACAACGTTTGAGCACGTGTTCCAGAAGCAGTTGGCTTCATCCAGAGTACCTCAA TTTTGGAAGCCCCTCTTGGATCTGGAAGGGCCTACCACAGCAGTGTCCAACTCCAGATATTTGAGTGACTTTGAAGAGCTACGCCCACTTGGTCATGGTG GTTTTGGTCATGTTGTTTTGTGCAAAAATAAGTTGGACGGCAGGCAGTACGCGGTCAAGAAAATTCGTCTCAAAGACAAAAATTTACCAGTTGATGATAG AATATTGAGGTAA
AA sequence Show only first row Show all	>Lus10014897 pacid=23142429 polypeptide=Lus10014897 locus=Lus10014897.g ID=Lus10014897.BGIv1.0 annot-version=v1.0 MGHSSKKKKTKKGGSGRRNKDHSSTSADGNELLSEEITALSAIFQEDCKIVTGPPTQIIIKISPHSKDMGFEDLDISAQLSVRCLPGYPYKSPKLKITPE KGLTENDLESLLSLLQEQASSNAREGRVMIFNLVEAAQEFLSQIVPPEPESKSVSCSTVDSASQLFQKELLVSDDKNCSSTGLYVYGFLDLFSGSGESWC WGLPLDDNRVIKSLSSDASNVKSDVSGVKLDKTEPTTDQTKKQGPFPGPNTMLDILEEESEDGNNSDFNTDTRSSVNDQLVGHEREGKNEDSSDSEQVSV DSSDKSEYDQRKSVSFISFDHDSASQSIEKELIMVHLLRLASSSKGLLPVDGFPNIISELCNLGVLSEKMQEFATRPSSIFATTFEHVFQKQLASSRVPQ FWKPLLDLEGPTTAVSNSRYLSDFEELRPLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKNLPVDDRILR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014897 [exp]	0	1
AT1G02080			transcription regulators (.1.2...		Lus10028176 [exp]	2.0	0.9654
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Lus10012798 [exp]	2.8	0.9642
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10033928 [exp]	4.0	0.9578
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001101 [exp]	6.0	0.9397
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035973 [exp]	7.9	0.9588
					Lus10005872 [exp]	8.1	0.9534
AT5G15680			ARM repeat superfamily protein...		Lus10035142 [exp]	11.4	0.9553
AT5G16280			Tetratricopeptide repeat (TPR)...		Lus10021264 [exp]	12.5	0.9276
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10025352 [exp]	13.5	0.9524
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016882 [exp]	13.6	0.9519

Compare expression of checked genes

Lus10014897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.