Plant FIBer expression Database

Lus10014898 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G33740 198 / 5e-65 CUTA Nitrogen regulatory PII-like, alpha/beta (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G103700
[exp]
225 / 2e-75 AT2G33740 228 / 4e-77 Nitrogen regulatory PII-like, alpha/beta (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0089 GlnB-like PF03091 CutA1 CutA1 divalent ion tolerance protein
Representative CDS sequence
>Lus10014898 pacid=23142418 polypeptide=Lus10014898 locus=Lus10014898.g ID=Lus10014898.BGIv1.0 annot-version=v1.0
ATGTACGCCGCTTTTTTTTTGGGTACGCAAATGTCAATTCTCCGCTCGTCGCTGGTCTCATCCTCCTTAATCAGACGCCGTTTACCGCTTTTTGGAGCAT
TTTGCATGCTGAGCTTGGGAGTTTCCAATCTCTCTTCCCCGGCGTTCTCCTCTTCTTCTGCTCCATCTCTTGCTTTCCTCCCTGTCTTACGATCAAAATT
CAGTACAGAGGCAAAGCACAACTCTGTGAGAATGGAAGGAGGCAGCAACTCAGTTCCCAGTATCGTGGTTTATGTTACCGTTCCCAACAGAGAAGCTGGA
AAGAAGTTGGCTTACAGCATTGTCAAAGAGAGACTAGCAGCATGTGTTAATATAGTTCCAGGTATTGAATCAGTTTATGAGTGGAAAGGGGAGATCCAGA
CAGATTCTGAAGAACTTCTGATAATCAAGACCCGCCAGTCCTTGCTGGAATCTCTCACTGAACATGTAAAAGCGAATCATGAATATGATACACCGGAAGT
AATCTCATTGCCGATAACGGGAGGCAGCAGTGAATACCTAGAATGGGTGAAGAAGAGCACCAGAGAGTGA
AA sequence
>Lus10014898 pacid=23142418 polypeptide=Lus10014898 locus=Lus10014898.g ID=Lus10014898.BGIv1.0 annot-version=v1.0
MYAAFFLGTQMSILRSSLVSSSLIRRRLPLFGAFCMLSLGVSNLSSPAFSSSSAPSLAFLPVLRSKFSTEAKHNSVRMEGGSNSVPSIVVYVTVPNREAG
KKLAYSIVKERLAACVNIVPGIESVYEWKGEIQTDSEELLIIKTRQSLLESLTEHVKANHEYDTPEVISLPITGGSSEYLEWVKKSTRE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G33740 CUTA Nitrogen regulatory PII-like, ... Lus10014898
[exp]
0 1
AT2G20140 RPT2b regulatory particle AAA-ATPase... Lus10015524
[exp]
1.7 0.9397
AT3G54010 DEI1, PAS1 PASTICCINO 1, FKBP-type peptid... Lus10021502
[exp]
2.0 0.9369
AT4G02860 Phenazine biosynthesis PhzC/Ph... Lus10003725
[exp]
4.1 0.9236
AT2G21120 Protein of unknown function (D... Lus10012716
[exp]
4.9 0.9302
AT4G09900 ATMES12 ARABIDOPSIS THALIANA METHYL ES... Lus10005298
[exp]
4.9 0.9334
AT5G49960 unknown protein Lus10013455
[exp]
5.5 0.9353
AT1G79790 AtcpFHy1 flavin mononucleotide hydrolas... Lus10009551
[exp]
6.2 0.9116
AT5G22080 Chaperone DnaJ-domain superfam... Lus10013354
[exp]
7.0 0.9305
AT5G48630 Cyclin family protein (.1.2) Lus10003151
[exp]
9.7 0.9329
AT4G22740 glycine-rich protein (.1.2) Lus10024563
[exp]
10.0 0.9082

Lus10014898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.