Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33735 84 / 3e-22 Chaperone DnaJ-domain superfamily protein (.1) AT5G16650 80 / 2e-20 Chaperone DnaJ-domain superfamily protein (.1) AT5G01390 61 / 3e-12 DNAJ heat shock family protein (.1.2.3.4) AT2G20560 61 / 4e-12 DNAJ heat shock family protein (.1) AT3G08910 61 / 6e-12 DNAJ heat shock family protein (.1) AT4G28480 60 / 9e-12 DNAJ heat shock family protein (.1.2) AT5G25530 59 / 2e-11 DNAJ heat shock family protein (.1) AT1G10350 56 / 3e-10 DNAJ heat shock family protein (.1) AT3G62600 55 / 8e-10 ATERDJ3B DNAJ heat shock family protein (.1) AT3G47940 52 / 6e-09 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040535 [exp] 181 / 8e-60 AT2G33735 84 / 1e-21 Chaperone DnaJ-domain superfamily protein (.1) Lus10000010 [exp] 119 / 2e-36 AT5G16650 47 / 5e-08 Chaperone DnaJ-domain superfamily protein (.1) Lus10017687 [exp] 62 / 3e-12 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10008109 [exp] 61 / 6e-12 AT5G25530 401 / 1e-132 DNAJ heat shock family protein (.1) Lus10027803 [exp] 61 / 9e-12 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 61 / 9e-12 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10041254 [exp] 59 / 4e-11 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10021961 [exp] 59 / 4e-11 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10013981 [exp] 59 / 4e-11 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G103900 [exp] 113 / 2e-33 AT2G33735 147 / 2e-46 Chaperone DnaJ-domain superfamily protein (.1) Potri.019G041400 [exp] 81 / 1e-20 AT5G16650 193 / 5e-65 Chaperone DnaJ-domain superfamily protein (.1) Potri.013G078200 [exp] 76 / 1e-18 AT5G16650 198 / 6e-67 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G136700 [exp] 61 / 7e-12 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 60 / 1e-11 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 60 / 1e-11 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 59 / 2e-11 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 59 / 3e-11 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 57 / 1e-10 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 55 / 9e-10 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10014901 pacid=23142407 polypeptide=Lus10014901 locus=Lus10014901.g ID=Lus10014901.BGIv1.0 annot-version=v1.0 ATGACTTTCGATGATTTCGACGATCCTCAATCTTCTTCTCATCAGCCCAACCACCAGGACGCTTACCTCAATTTCGATTTCTTCTCTCTCGTTTCCAACC CCAAGGATTACTACAAGCTTCTGGAAGTCGACTACGATGCTTCTGATGATGCTATTCGCTCCAATTACATCCGCCTCGCTTTGAAATGGCATCCCGATAA GCACAAGGACCAGGAGGACAATGCCACTTCTCGATTTCAAGACATTAATGAGGCTTACCAAGCAGAATTAGGGTGGGAAATTTGGGATGTTAGATTGTGG GTCTCACTATGGAGTCTAGGGGTTCGGTTGTTCGCAGAGAATTGA
AA sequence Show only first row Show all	>Lus10014901 pacid=23142407 polypeptide=Lus10014901 locus=Lus10014901.g ID=Lus10014901.BGIv1.0 annot-version=v1.0 MTFDDFDDPQSSSHQPNHQDAYLNFDFFSLVSNPKDYYKLLEVDYDASDDAIRSNYIRLALKWHPDKHKDQEDNATSRFQDINEAYQAELGWEIWDVRLW VSLWSLGVRLFAEN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33735			Chaperone DnaJ-domain superfam...		Lus10014901 [exp]	0	1
AT5G59140			BTB/POZ domain-containing prot...		Lus10016485 [exp]	2.0	0.8783
AT1G06060			LisH and RanBPM domains contai...		Lus10005633 [exp]	2.8	0.8495
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10018672 [exp]	3.5	0.8581
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10030297 [exp]	5.5	0.8492
AT1G28250			unknown protein		Lus10014006 [exp]	7.1	0.8346
AT3G13950			unknown protein		Lus10029088 [exp]	8.5	0.8435
AT1G43900			Protein phosphatase 2C family ...		Lus10042775 [exp]	12.6	0.8081
AT1G12390			Cornichon family protein (.1)		Lus10004320 [exp]	13.0	0.8318
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10002638 [exp]	13.2	0.8510
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	17.5	0.8314

Compare expression of checked genes

Lus10014901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.