Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55500 256 / 7e-82 ATXYLT "beta-1,2-xylosyltransferase", ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE, beta-1,2-xylosyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016585 [exp] 391 / 7e-135 AT5G55500 616 / 0.0 "beta-1,2-xylosyltransferase", ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE, beta-1,2-xylosyltransferase (.1) Lus10017516 [exp] 59 / 2e-09 AT5G20250 1145 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360600 [exp] 306 / 9e-102 AT5G55500 600 / 0.0 "beta-1,2-xylosyltransferase", ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE, beta-1,2-xylosyltransferase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014902 pacid=23142408 polypeptide=Lus10014902 locus=Lus10014902.g ID=Lus10014902.BGIv1.0 annot-version=v1.0 ATGTCTCCCGCGACATCAACATCCGTCATCGATTATAACGAACTTTGGCGATGTACCACTGTCGCCCAAGCTCCGGAGGCCGGACTCGACGCGTTCTTGC ATAACCTCCCGGTAGAACGCGTCTCACGTGTACCACCTGACGCCTTTGTGGACCATTGCCCCGAGGAAGACTCCCTTCACCGGGCCGGAGTCGGAGCTCG ACGTCACCGCAACATTTTCAGGTACTCCGACAAGTATCGTCCGGGTCTAAATGAAGATATATTTTGTTATGGAGCCCCTGTGCCAGAACTTTCGAAAAAC CCTGATGACAAGAAGACTGCAAGATTGTCCAAGTTTGGAGAAATGATTAGAGCAGCTTTTCACTTCACTGTCAATAGGTATGGCGCTGAAAAGCCAGCTT GGGGTCACAACGTTCTTTTTGTAAGAAGAGAGGATTACTTGGCACATCGACGGCACGATGGCAAGGTTCAATCAAGACTAAGCAATGAAGAAGAGGTGTT TGATGCGGTTCTGAAATGGGCATCTGAGCACAAGGAATGTAAAGTGAACGTGGTCAATGGATTATTTGCGCACATGGGAATGAAGGAGCAAGTGAAAGCC ATTCAAGAGGCTTCAGTTATCATCGGAGCTCACGGGGCAGGCCTAACTCACATAGTATCGGCAACACCAAAAACAGTAATTTTGGAGATTGTCAGTGCTG AGTTCAGACGCCCGCATTTTCAGTTGCTTGCGAAGTGGAAAGGGCTAGAGTACCACGCCATCTATCTGGATGAATCTCATGCGGATCCCGTGGTTGTCAT CAGCAGGTTAGGGAGGATAATGAAAAGCCTTGAATGCTGA
AA sequence Show only first row Show all	>Lus10014902 pacid=23142408 polypeptide=Lus10014902 locus=Lus10014902.g ID=Lus10014902.BGIv1.0 annot-version=v1.0 MSPATSTSVIDYNELWRCTTVAQAPEAGLDAFLHNLPVERVSRVPPDAFVDHCPEEDSLHRAGVGARRHRNIFRYSDKYRPGLNEDIFCYGAPVPELSKN PDDKKTARLSKFGEMIRAAFHFTVNRYGAEKPAWGHNVLFVRREDYLAHRRHDGKVQSRLSNEEEVFDAVLKWASEHKECKVNVVNGLFAHMGMKEQVKA IQEASVIIGAHGAGLTHIVSATPKTVILEIVSAEFRRPHFQLLAKWKGLEYHAIYLDESHADPVVVISRLGRIMKSLEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55500		ATXYLT	"beta-1,2-xylosyltransferase",...		Lus10014902 [exp]	0	1
AT2G39260			binding;RNA binding (.1)		Lus10030801 [exp]	1.0	0.9193
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10002628 [exp]	1.7	0.9024
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011716 [exp]	2.4	0.9078
AT2G47790			Transducin/WD40 repeat-like su...		Lus10003441 [exp]	3.5	0.8757
AT1G76970			Target of Myb protein 1 (.1)		Lus10017220 [exp]	3.7	0.8275
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10039935 [exp]	3.9	0.8904
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011717 [exp]	4.0	0.8997
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10030308 [exp]	5.5	0.8482
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10007479 [exp]	7.0	0.8705
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10006596 [exp]	7.9	0.8506

Compare expression of checked genes

Lus10014902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.