Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26690 800 / 0 GDPDL3, GPDL2, MRH5, SHV3 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) AT5G55480 784 / 0 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) AT1G66970 768 / 0 GDPDL1, SVL2 Glycerophosphodiester phosphodiesterase \(GDPD\) like 1, SHV3-like 2 (.1.2) AT1G66980 746 / 0 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT3G20520 649 / 0 GDPDL5, SVL3 Glycerophosphodiester phosphodiesterase \(GDPD\) like 5, SHV3-like 3 (.1) AT5G58170 594 / 0 GDPDL7, SVL5 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) AT5G58050 592 / 0 GDPDL6, SVL4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) AT5G08030 78 / 5e-15 AtGDPD6 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1) AT1G74210 69 / 5e-12 AtGDPD5 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016584 [exp] 1360 / 0 AT4G26690 801 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10031604 [exp] 1204 / 0 AT4G26690 817 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10032576 [exp] 1110 / 0 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10018042 [exp] 1107 / 0 AT5G55480 721 / 0.0 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) Lus10043171 [exp] 882 / 0 AT4G26690 665 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10019605 [exp] 484 / 9e-161 AT5G58170 670 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10040037 [exp] 402 / 1e-128 AT1G66980 580 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10040036 [exp] 385 / 2e-124 AT5G58170 520 / 6e-177 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10019606 [exp] 377 / 1e-120 AT5G58170 454 / 9e-151 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360800 [exp] 874 / 0 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.001G360700 [exp] 860 / 0 AT4G26690 835 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.018G110600 [exp] 590 / 0 AT5G58050 870 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) Potri.006G187600 [exp] 590 / 0 AT5G58170 893 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Potri.015G058400 [exp] 74 / 9e-14 AT1G74210 611 / 0.0 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF03009 [flax] [poplar] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Lus10014903 pacid=23142439 polypeptide=Lus10014903 locus=Lus10014903.g ID=Lus10014903.BGIv1.0 annot-version=v1.0 ATGATGATGACCTGTTGCCGGCCGGCAATGTCTGCTCGTCGACTTCATTTTACAGCCTCTCTTCTACTACTCCTCCCTCTTCTGCTTAACTCCTTTCCAC CTTCCGTCTCTGCTCAGCAGGGATCTACTCCTTCCTGGAAGACTCTATCCGGAAATTACCCCTTGGTCGTAGCTCGGGGTGGATTTTCAGGTCTATTCCC GGATTCTTCCTCCATCGCTTACCAGTTTGCGCAGCAGATCAGTGTCCCCGATGTTATCCTTTGGTGTGATTTGCAGCTAACCAAAGATGCTATTGGGATT TGCGCTCCTGACCTCAAGCTTGATAATTCTACTGATATCAGTAAGTTTTACAAAAACCGTCAGGCTACCTACACAGTCAATGGCGTTAAGCAAGATGGAT GGTTTCCTTCGGATTTCACCTTCAAGGAGCTCTCAACTGTTTCCTTAACACAGGGAGTATATTCTCGCAGTCCATATTACGATTCCAATTCGTTCCCAAT CCTTACTGTTGATAATGTTGCTGGATTAAAGCCTGCTGGTCTCTGGTTAAATGTTCAGCATGATGCATTCTACACTCAGCAGAATTTGAGTATGAGAAGC TATGTTCTCGCTGCATCTAAAAGAGTGGTTCTAAACTACATTTCTTCTCCCGAATTGGGGTTCTTGAGAAGTATTTCTACACGATTCAACCCAAACATCA CCAAATTGTTCTTTCGGTTCAATGGAGAGAAGGAGATTGAGCCTACATTGAACCAGACTTATGGTTCTCTATTGTCAAATTTAACATTTATCAGGACATT TGCCTCTGGAATTATTGTCCCCAAGACTTACATATGGGCTGTGGACGCAAGTAATTATCTAAGCTCCAGTGGTGGTCCTCTTAATGTCTTGGACGCGCAC AAAGCTGGGCTTGAAGTTTTTGCCTCTGACTTTTTCAACGACGCTATTCTGAGTTACAATTACAGTTATGATCCAGTATCTGAATATTTGAACTTTGTGG ACAATGGTCAGTTCTCCGTTGATGGTGTATTGTCTGACTACCCAATAACTCCATCTACCGCATTTGATTGCTTCTCTAATCTGGCCCAGAATGCTTCAGA AAGCGTCAAGTTTTTGGTCATCTCCAAAAACGGTGCAAGTGGAGACTATCCTGGCTGTACCGATATTGCATACCAAACTGCTATCTCGGACGGTGCGGAT GTTATCGATTGTCCAATCCAGATGTCTCAAGATGCAATCCCATTCTGCCAAAGCTCTATAAATCTTATAGAGACTACAAAAGCTGCTGAAACGTTGAATA ATTATTCAACAAGTATTCCGGAGCTCCAAGGCAATGGAATATATTCCTTTAGTTTACCATGGACACAGATTCAGAATTTGGCTCCGGCCATATCAAATCC ATATTCAAGCTTTCAGTTGTTCAGGAATCCAAAGATGAGAAATGCTGGGAAGTTGGTATCACTAGCTGACTTCTTGGCATTGGCGAAAGACAATGAGAAA TCTCTGTCTGGTGTATTAATTAAGATTGAGAACGCAGCATATCTAATGGAGAAGCAGGGGCTGGCTGTACTTGATGCGGTTGAGAGCGAGTTGGAAAAAG CTGGTTACGGTAATCAGACAGCTCTGAAAGTGATGATTCAGTCCACCAACAGCTCAGTTTTAATGAAGTTCAAGGATAAGAAAAACGAGTACGAGCTGGT GTACCAGGTTGATGAGACAATTGGAAGTGCGGAGAGTTCAGCCATTACAGACATGAAGGAATTTGCTGATTCTGTAATGATCACCAAGACATCGGTGTTC CCTGTTAACCAATTTTTCCTCACTGGAATGACCGATGTTGTATCAAGGCTACAATCGGCTAAACTCCCTGTGTACGTGGAAACATTCAGCAATGAGTTTG CATCTCAACCATGGGACTTCTTTGCAGATGCTAACGTGGAACTCAACACCTATATCTCCGGAACCAACATTACAGGTGTTGTCACAGACTTTCCCAAGAC ATCTGCCAGATTCAAAAAGAACGTCTGTTCTGGTAAAGGCGACAATACCCCAATATACATGGCCCCTGTTCAGGCAGGTAGCCTGCTAGGAGTAATTGCA CCTCCATCGTTGCCGCCAGCTGAAGCTCCAAGCCCGCCTCTAACTGAGAACGATATCGCAGAGGGGCCTTTGCCTGCTGTTGGAGACAAACCTACGACTC CTACTCCCCCGGGCTCGGGTACACCACCAAGTCCATCAAATGGGGAGCCAATGGTGGGAGCCCGTACCACAGTTTGGGGTGTGGCTATGCTGCTTTTCAC ATCACTTCTGTTGGTTTGA
AA sequence Show only first row Show all	>Lus10014903 pacid=23142439 polypeptide=Lus10014903 locus=Lus10014903.g ID=Lus10014903.BGIv1.0 annot-version=v1.0 MMMTCCRPAMSARRLHFTASLLLLLPLLLNSFPPSVSAQQGSTPSWKTLSGNYPLVVARGGFSGLFPDSSSIAYQFAQQISVPDVILWCDLQLTKDAIGI CAPDLKLDNSTDISKFYKNRQATYTVNGVKQDGWFPSDFTFKELSTVSLTQGVYSRSPYYDSNSFPILTVDNVAGLKPAGLWLNVQHDAFYTQQNLSMRS YVLAASKRVVLNYISSPELGFLRSISTRFNPNITKLFFRFNGEKEIEPTLNQTYGSLLSNLTFIRTFASGIIVPKTYIWAVDASNYLSSSGGPLNVLDAH KAGLEVFASDFFNDAILSYNYSYDPVSEYLNFVDNGQFSVDGVLSDYPITPSTAFDCFSNLAQNASESVKFLVISKNGASGDYPGCTDIAYQTAISDGAD VIDCPIQMSQDAIPFCQSSINLIETTKAAETLNNYSTSIPELQGNGIYSFSLPWTQIQNLAPAISNPYSSFQLFRNPKMRNAGKLVSLADFLALAKDNEK SLSGVLIKIENAAYLMEKQGLAVLDAVESELEKAGYGNQTALKVMIQSTNSSVLMKFKDKKNEYELVYQVDETIGSAESSAITDMKEFADSVMITKTSVF PVNQFFLTGMTDVVSRLQSAKLPVYVETFSNEFASQPWDFFADANVELNTYISGTNITGVVTDFPKTSARFKKNVCSGKGDNTPIYMAPVQAGSLLGVIA PPSLPPAEAPSPPLTENDIAEGPLPAVGDKPTTPTPPGSGTPPSPSNGEPMVGARTTVWGVAMLLFTSLLLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10014903 [exp]	0	1
AT3G07210			unknown protein		Lus10025908 [exp]	1.0	0.9251
AT3G08030			Protein of unknown function, D...		Lus10039602 [exp]	9.8	0.9082
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10018765 [exp]	13.7	0.9081
AT1G76240			Arabidopsis protein of unknown...		Lus10016005 [exp]	23.7	0.8948
AT4G02100			Heat shock protein DnaJ with t...		Lus10036335 [exp]	25.3	0.8714
AT3G07010			Pectin lyase-like superfamily ...		Lus10011885 [exp]	25.8	0.8965
AT3G16850			Pectin lyase-like superfamily ...		Lus10016837 [exp]	26.5	0.8930
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10002185 [exp]	26.9	0.9069
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10008627 [exp]	29.3	0.8787
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10024388 [exp]	30.2	0.8725

Compare expression of checked genes

Lus10014903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.