Plant FIBer expression Database

Lus10014904 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G20898 58 / 1e-11 unknown protein
AT3G20900 50 / 6e-09 unknown protein
AT1G51355 47 / 4e-07 unknown protein
AT1G60783 38 / 0.0005 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G257700
[exp]
67 / 1e-14 AT3G20898 78 / 1e-19 unknown protein
Potri.009G053000
[exp]
66 / 2e-14 AT3G20898 76 / 9e-19 unknown protein
Potri.006G053600
[exp]
54 / 4e-10 AT3G20898 67 / 1e-15 unknown protein
Potri.016G053900
[exp]
52 / 3e-09 AT3G20898 68 / 5e-16 unknown protein
PFAM info
Representative CDS sequence
>Lus10014904 pacid=23152842 polypeptide=Lus10014904 locus=Lus10014904.g ID=Lus10014904.BGIv1.0 annot-version=v1.0
ATGGCTCCCAATACCTTGAGAAGAAGCACCAGATCAAGACGCCTCGTCAAAACCATCAAAACCAACCCCAAATCCAAACCCATAACCAAAACAAAACCAC
CCAAAAGAACTCCGAATCAACCAGCTGGCGCTTCAATCACAACAACCACCAGCTCCTCTGCCTCCGCCGCCGCAAACGAAGAACAGAGCAGCAGCATCGT
CATCGACTTCCGAAGCGACGCCGTTTTGGTTAACGAGGGTCTCTGCTCGACGCCCAAAGGGAAGAAGTTCCGGATACCCAAGATCGAGACTTGCCCGCCA
GCGCCGAGGAAGCAGAGAGTTGATTTTGAAGTGATTTCGCCGGCAACTTCGTCGCCGCCGGCGACGACCAACAATAACTGTTCTTCTTCTTCATCGGCGA
GGAGGCCGCCGCGGCCAATAGCTTTCTTCTCGCCTCCTGATCTTGAGCTCTTCTTCTTCTTCGCCCGCCGCCACATCTCTGTTTGA
AA sequence
>Lus10014904 pacid=23152842 polypeptide=Lus10014904 locus=Lus10014904.g ID=Lus10014904.BGIv1.0 annot-version=v1.0
MAPNTLRRSTRSRRLVKTIKTNPKSKPITKTKPPKRTPNQPAGASITTTTSSSASAAANEEQSSSIVIDFRSDAVLVNEGLCSTPKGKKFRIPKIETCPP
APRKQRVDFEVISPATSSPPATTNNNCSSSSSARRPPRPIAFFSPPDLELFFFFARRHISV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G20898 unknown protein Lus10014904
[exp]
0 1
AT1G61800 ATGPT2, GPT2 ARABIDOPSIS GLUCOSE-6-PHOSPHAT... Lus10007653
[exp]
2.8 0.9005
AT1G67330 Protein of unknown function (D... Lus10037026
[exp]
4.5 0.8968
Lus10036557
[exp]
8.5 0.8824
AT5G45420 MYB maMYB membrane anchored MYB, Duplica... Lus10039841
[exp]
8.5 0.8929
AT3G45230 hydroxyproline-rich glycoprote... Lus10037404
[exp]
10.7 0.8813
AT3G08640 Protein of unknown function (D... Lus10035607
[exp]
13.2 0.8792
AT5G06920 FLA21 FASCICLIN-like arabinogalactan... Lus10019675
[exp]
15.9 0.8601
AT2G45260 Plant protein of unknown funct... Lus10030291
[exp]
16.2 0.8506
AT1G11080 SCPL31 serine carboxypeptidase-like 3... Lus10011213
[exp]
25.0 0.8365
AT5G19790 AP2_ERF RAP2.11 related to AP2 11 (.1) Lus10036556
[exp]
25.3 0.8328

Lus10014904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.