Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47890 163 / 3e-43 AtRLP7 receptor like protein 7 (.1) AT1G45616 154 / 3e-40 AtRLP6 receptor like protein 6 (.1) AT3G11080 152 / 2e-39 AtRLP35 receptor like protein 35 (.1) AT3G05660 150 / 7e-39 AtRLP33 receptor like protein 33 (.1) AT5G25910 149 / 2e-38 AtRLP52 receptor like protein 52 (.1) AT2G32660 144 / 2e-37 AtRLP22 receptor like protein 22 (.1) AT3G11010 145 / 3e-37 AtRLP34 receptor like protein 34 (.1) AT4G13810 144 / 6e-37 AtRLP47 receptor like protein 47 (.1.2) AT2G33060 144 / 7e-37 AtRLP27 receptor like protein 27 (.1) AT2G33020 143 / 1e-36 AtRLP24 receptor like protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032335 [exp] 330 / 2e-104 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10024721 [exp] 313 / 5e-98 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10011039 [exp] 299 / 9e-90 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10011064 [exp] 291 / 2e-88 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10014910 [exp] 271 / 3e-82 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10027580 [exp] 196 / 1e-56 AT5G62230 194 / 4e-53 ERECTA-like 1 (.1.2) Lus10002214 [exp] 175 / 1e-48 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10003389 [exp] 173 / 2e-46 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10026415 [exp] 171 / 7e-46 AT1G47890 424 / 3e-131 receptor like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128400 [exp] 210 / 3e-59 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.012G005600 [exp] 181 / 2e-49 AT1G45616 379 / 3e-115 receptor like protein 6 (.1) Potri.012G019850 [exp] 180 / 2e-49 AT4G13810 309 / 2e-94 receptor like protein 47 (.1.2) Potri.012G028500 [exp] 181 / 3e-49 AT1G45616 371 / 6e-112 receptor like protein 6 (.1) Potri.012G030125 [exp] 179 / 8e-49 AT2G33060 330 / 2e-100 receptor like protein 27 (.1) Potri.012G025400 [exp] 179 / 9e-49 AT1G45616 399 / 7e-122 receptor like protein 6 (.1) Potri.012G014625 [exp] 179 / 1e-48 AT3G05660 366 / 4e-112 receptor like protein 33 (.1) Potri.012G026900 [exp] 178 / 2e-48 AT3G25010 315 / 2e-93 receptor like protein 41 (.1) Potri.012G028600 [exp] 177 / 4e-48 AT1G47890 395 / 1e-120 receptor like protein 7 (.1) Potri.012G008300 [exp] 177 / 4e-48 AT2G33060 332 / 5e-101 receptor like protein 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014905 pacid=23152745 polypeptide=Lus10014905 locus=Lus10014905.g ID=Lus10014905.BGIv1.0 annot-version=v1.0 ATGGAGGTACTCATAAGCATACAGAAACAGAATACTCTAGATATATCAAACATGATGGCAAACAAGTCACTCGCCATTTTTGTAATAGCAATTATAGCAC TCTGCCATCTTTGCTCCTCTGTTTCTCCCACCCAACCCCAATGCCTAGAGCATGAAAGATCACTTCTTTTGCAACTCAAACGCGAAATCTCCATTAATTA TACTCGTCTTTCAAATATCCAGCAACCTCCATTGCCGAAAGTTTGGTCATGGAACGACACCGGAAATCACAAAGATAATTGTTGTTTCTGGGAAGGAGTC ACTTGTGATTCCCATTCAGGTAATGTTGTCGGCCTCGACCTAAGTCGGAGCTCCATTATTGATGGAATCAATAGTGTATTTCGGCTAGAGGGGTTGCGTT ACCTCGATCTTTCGAATAACAAGATCAAGGGAAATATCTCTCCATCCGCATGCGATTTGCGGTTTCTACTAGTCTTGGATCTCTCCAACAATCATTTTAA TGGTTCCATTCCATCGTGCTTGAGTTCACTCTCTTTGAGAGTGCTAAGCATAAGAAATAACGAATTAAGTGGGATGCTCCCAACAGGTTTTGGAGACAGG TGTAGCTTGAGAACTCTTGATGTGAACCGGAACAACCTCCATGGCCAAATTCCAGAATCTCTAGGCTTGTGTAAGTATCTACAAGTTGTAGATGTTGGAA AAAACAACTTGACCGGGAAGTTTCCTGTTTTGTTGGAGGACTTGCCGGAGTTGAGAGTTCTCGTCTTGCGCTCTAATCAGTTTGGTGGCTCTATTGATTC TCAAAACCCAAATGGCTTTCCACATCTGCAAATACTTGATGTTTCTTCCAATAAATTTGTGGGTAAGCTTCCTTTAGGATGGTTTACAAGTTGGGAGGTA ATGATGAAGTCGGCTGCTAACGTATCCGTCTTACTCGATGTGTCCAACAACGACTTTACTGGCGAAATTCCTGACACAATAGCTCAACTCGAGTCTCTGC AGCTGCTCAACCTCTCCAGCAACCATTTCACAGGTCACATTCCAAGTTCATTCGGGCAACTAAGGCGGTTGGAATCACTAGACCTTTCATCAAACAACCT CTCTGGCAACATCCCCTCACTACTTACCGAGCTCACGTTCCTATCATTTCTGAACATGTCAAATAATTTACTGAGTGGGATAATACCTCATGGAAGCCAG TTTGATACTTTTACTGCAGATTGTTATTATGGGAATCCTGATCTATGTGGCAAACCCTTGCCTAAACCTTGCTTTGAAGTGAAATCCTCAACGTCTTCGG CCACCAATAGTCGAAGGAGGAAATGTATGATCGATTGGGATTGTTTCAGAGCCGGGATCGCATCAAGTGTTATCCTTGGAATGTGGTAG
AA sequence Show only first row Show all	>Lus10014905 pacid=23152745 polypeptide=Lus10014905 locus=Lus10014905.g ID=Lus10014905.BGIv1.0 annot-version=v1.0 MEVLISIQKQNTLDISNMMANKSLAIFVIAIIALCHLCSSVSPTQPQCLEHERSLLLQLKREISINYTRLSNIQQPPLPKVWSWNDTGNHKDNCCFWEGV TCDSHSGNVVGLDLSRSSIIDGINSVFRLEGLRYLDLSNNKIKGNISPSACDLRFLLVLDLSNNHFNGSIPSCLSSLSLRVLSIRNNELSGMLPTGFGDR CSLRTLDVNRNNLHGQIPESLGLCKYLQVVDVGKNNLTGKFPVLLEDLPELRVLVLRSNQFGGSIDSQNPNGFPHLQILDVSSNKFVGKLPLGWFTSWEV MMKSAANVSVLLDVSNNDFTGEIPDTIAQLESLQLLNLSSNHFTGHIPSSFGQLRRLESLDLSSNNLSGNIPSLLTELTFLSFLNMSNNLLSGIIPHGSQ FDTFTADCYYGNPDLCGKPLPKPCFEVKSSTSSATNSRRRKCMIDWDCFRAGIASSVILGMW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10014905 [exp]	0	1
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10019898 [exp]	1.0	0.9738
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10005229 [exp]	2.4	0.9308
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10033510 [exp]	2.4	0.9304
AT4G18340			Glycosyl hydrolase superfamily...		Lus10038501 [exp]	4.0	0.9156
AT1G60060			Serine/threonine-protein kinas...		Lus10012986 [exp]	5.9	0.9145
AT3G11680			Aluminium activated malate tra...		Lus10021272 [exp]	6.5	0.9104
					Lus10015658 [exp]	6.5	0.9082
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Lus10032316 [exp]	7.7	0.9011
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	8.0	0.9039
AT5G62890			Xanthine/uracil permease famil...		Lus10029191 [exp]	9.0	0.9021

Compare expression of checked genes

Lus10014905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.