Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20920 484 / 2e-172 translocation protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027362 [exp] 613 / 0 AT3G20920 498 / 4e-178 translocation protein-related (.1.2) Lus10009945 [exp] 553 / 0 AT3G20920 506 / 0.0 translocation protein-related (.1.2) Lus10030136 [exp] 550 / 0 AT3G20920 508 / 0.0 translocation protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G052800 [exp] 523 / 0 AT3G20920 451 / 5e-159 translocation protein-related (.1.2) Potri.001G257500 [exp] 515 / 0 AT3G20920 465 / 1e-164 translocation protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03839 [flax] [poplar] Sec62 Translocation protein Sec62
Representative CDS sequence Show only first row Show all	>Lus10014906 pacid=23152801 polypeptide=Lus10014906 locus=Lus10014906.g ID=Lus10014906.BGIv1.0 annot-version=v1.0 ATGCTTTATTCTGTGCTGTCCAAACTCAATTCAACAGCTTTCGCTTGTGAACTCTGTAGCAAAATACATTTTCAATATCCACACAGGAAAAAGAAGCAAA CTTTAATCTCAGGGATGAAGAAACCAGGAGGAGCAGACAAGAAAAGGGTCCGGAGATCCTCTGCCGCAGTTCAGAATGGCAGCCGAGATCCTAATTCCGA TTCCCAGCCTAGGAAACAAGCTGCAAAGGACACTTTCCAGTTGTTTGCCGAGAAGGTGAGAGACCACAAAGAGTTGGTCTCTCGATGGGCAGTTCTGCAG GAAACCCGTGTGGAATACTTCAGGGGCAAAGACTTTGTAACTTTTCTAAAGAACCATCCAGAGGTGAAGGATACATTGGATACAGAGAAGGACTTAGAGG TCGAAGAGATTGCCAATACTTTATTGAGTAAGAACCTCTTGGTTCGTTGCGATCGTGTAGTGAAAACTATTCGTCCCGGGAAGAAAAAGCTCTCAACTTG GCCAGCACATCTGGAGATATTCCCTGATCAAGTGTTCTCAGATAACGATGCATTCTATGCGTGGGCATTCGTGAAACAAAGGCCGCTTTGGCAAACGCTT CTCTCGTTCTTCTGGCCCGTCTTAACTCTAGCAATCTGCTTGTTTCCCATATATCCTCACCGGTGCAAGCTTTTGATTCTCTACTCATGCGCCGGTGTCC TTTTGCTAATCATGTCCTTGCTTCTATTGAGAGCCACGGTATTCGGTACTCTGTATGTACTTGTAGGGAAGCGAGTGTGGTTCTTCCCTAACATCTTGGC AGAAGAAGCTACATTGGGAGAATTGTTCAGGTTCTGGCCCCAGAAGGATGAGGAGGAGCGTCCTAAGTGGACTACTAGGCTTTTCTATGCCGGTGTGGCT GTTTCGTTCATATTGCTGCTTAGACACCATGCACCGAACGAGGCAGCTCGAGCTAGGTACCAGAAGAGGATGTCGAATATCATTGATGACGTGTTGGAGT GGTCTCCGAGCCTAGCCCTATCTGGGTTCATGGATAAGCCGGCGAATGTGACTGAAGAAGCACAACCGGCAGAGGAAGATCATCATCATCAGGATCATGA TATATAG
AA sequence Show only first row Show all	>Lus10014906 pacid=23152801 polypeptide=Lus10014906 locus=Lus10014906.g ID=Lus10014906.BGIv1.0 annot-version=v1.0 MLYSVLSKLNSTAFACELCSKIHFQYPHRKKKQTLISGMKKPGGADKKRVRRSSAAVQNGSRDPNSDSQPRKQAAKDTFQLFAEKVRDHKELVSRWAVLQ ETRVEYFRGKDFVTFLKNHPEVKDTLDTEKDLEVEEIANTLLSKNLLVRCDRVVKTIRPGKKKLSTWPAHLEIFPDQVFSDNDAFYAWAFVKQRPLWQTL LSFFWPVLTLAICLFPIYPHRCKLLILYSCAGVLLLIMSLLLLRATVFGTLYVLVGKRVWFFPNILAEEATLGELFRFWPQKDEEERPKWTTRLFYAGVA VSFILLLRHHAPNEAARARYQKRMSNIIDDVLEWSPSLALSGFMDKPANVTEEAQPAEEDHHHQDHDI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20920			translocation protein-related ...		Lus10014906 [exp]	0	1
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Lus10010536 [exp]	11.9	0.8425
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10004805 [exp]	12.8	0.8413
AT5G46150			LEM3 (ligand-effect modulator ...		Lus10023290 [exp]	29.2	0.8041
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10037421 [exp]	43.5	0.8247
AT1G18700			DNAJ heat shock N-terminal dom...		Lus10021658 [exp]	45.4	0.7787
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10024605 [exp]	66.2	0.7778
AT5G03460			unknown protein		Lus10023922 [exp]	73.7	0.8158
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10018812 [exp]	73.9	0.8066
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10032550 [exp]	93.7	0.7703
AT1G09660			RNA-binding KH domain-containi...		Lus10035768 [exp]	99.0	0.7767

Compare expression of checked genes

Lus10014906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.