Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19450 881 / 0 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT5G12480 875 / 0 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT3G57530 818 / 0 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT2G41860 795 / 0 CPK14 calcium-dependent protein kinase 14 (.1.2) AT1G74740 723 / 0 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT3G51850 708 / 0 CPK13 calcium-dependent protein kinase 13 (.1) AT1G18890 697 / 0 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT2G31500 646 / 0 CPK24 calcium-dependent protein kinase 24 (.1) AT5G12180 558 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 548 / 0 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027361 [exp] 1046 / 0 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10009947 [exp] 947 / 0 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10030134 [exp] 824 / 0 AT5G19450 783 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10042370 [exp] 780 / 0 AT3G57530 820 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10026742 [exp] 776 / 0 AT3G57530 793 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10004807 [exp] 720 / 0 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10002482 [exp] 715 / 0 AT3G51850 979 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027808 [exp] 709 / 0 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10008631 [exp] 697 / 0 AT1G74740 886 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G257100 [exp] 909 / 0 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.009G052700 [exp] 909 / 0 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.016G054600 [exp] 846 / 0 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.006G052900 [exp] 832 / 0 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.015G066200 [exp] 730 / 0 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.012G071700 [exp] 729 / 0 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.016G117200 [exp] 716 / 0 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.006G101300 [exp] 706 / 0 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.007G127000 [exp] 654 / 0 AT2G31500 744 / 0.0 calcium-dependent protein kinase 24 (.1) Potri.004G207300 [exp] 545 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand CL0220 [flax] [poplar] PF01077 [flax] [poplar] NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
Representative CDS sequence Show only first row Show all	>Lus10014907 pacid=23152783 polypeptide=Lus10014907 locus=Lus10014907.g ID=Lus10014907.BGIv1.0 annot-version=v1.0 ATGGGGAACTGCTGTGCAAGCCCTGGCAACAGCTCTCCTAAGAACACCAAGAACAGCAAAGAGAAAGGCAAGAACAACAAAGGGAGCAATCCATTCTTCG GCACTGACTATGTAGTCAACGACAAGAAGCTCTACGTGTTGAGTGAACCTACTGGTAGGGACATCTCAGCTCACTACGATCTAGGTCGTGAGCTTGGCCG TGGCGAATTTGGGGTCACTTATTTGTCAACTGAGATGACCACTGGTGATAAGTATGCCTGCAAGTCTATCTCCAAGAAGAAGCTCAGGACTGCTATTGAT GTTGAGGATGTGAGGAGGGAAGTTGAGATCATGAAGCACTTGCCTCACCACCCGAATATCGTTTCAATTAAGGATACTTACGAGGATGACAGTGCTGTCC ACATTGTTATGGAGCTCTGTGAAGGTGGGGAGCTTTTCGATAGGATTGTTGCTAGAGGGCATTACACCGAACGGGCTGCTGCTGCTGTTATGCGCACCAT TGTTGAAGTTGTTCAGATGTGCCATAAGCATGGTGTGATGCACCGTGATCTCAAGCCGGAGAACTTTCTGTTTGCGAATAAGAAGGAAACGTCTGCTTTG AAGGCAATTGATTTTGGATTGTCTGTCTTCTTTAAACCTGGAGAGAGATTCAATGAGATAGTGGGAAGTCCATATTACATGGCTCCTGAGGTCTTGAAAC GGAACTATGGCCCTGAAGTTGACGTATGGAGCGCTGGAGTTATCCTCTACATCTTGCTCTGTGGAGTCCCTCCATTTTGGGCAGAAACCGAGCAGGGTGT GGCACAGGCGATTATACGATCGGTCATAGACTTCAAGAGGGATCCATGGCCTAAAGTTTCGGATAATGCAAAGGATCTAGTAAGGAAGATGCTTAATCCC GATCCTAAGCAACGCCTTACAGCTCAGCAAGTGCTTGACCATACGTGGCTGCAGAATGCGAAAAAGGCTCCGAATGTCCCGTTGGGCGAGACTGTGAGAA CCCGGCTCAAACAGTTCTCTATGATGAACAAACTCAAGAAAAGGGCACTTAGGGTGATAGCCGAGCACTTATCGTTGGAGGAAGTTGCTGGCATAAAGGA GACCTTTGACATGATGGACACAAGCCAAAGGGGTAAAATCAACATTGATGAGCTCAGAGTTGGCCTTCACAAGCTTGGCCAGCAGATTACTGATCCGGAT CTGCAAATCCTTATGGATGCTGTAAGTTCACTCATTCCATCCTCCTCTGTTTCAGCTTTCCTCGAAACGAACCAAGCAATTCCAAGATGTAAACTTAGTT CATGGTCTCGCGAGCAGGCTGACATCGATGGAGATGGAACTCTGAACTATGGAGAGTTTGTCGCGATCACCATCCACATCAAAAAGATGGGGAACGATGA GCATCTACACAAAGCGTTTGGGTTCTTTGACCAGAACAAGACAGGCTACATCGAGATGGAGGAGCTTCGACAAGCCTTGAACGACGACATTGACACTTGT AGCGAAGACGTGTTGAATGCCATCATGCACGACGTGGACACCGACAAGGACGGTCGAATAAGCTACGAGGAGTTTGCGACGATGATGAAGGCAGGGACGG ACTGGAGAAAAGCTTCGAGGCAATACTCGAGAGAGAGATTCAACAGTCTAAGCTTGAAGTTGATGAGAGATGGTTCATTGCAGGTTGTAGAGAGAAAAGA GCCATTAGAAGGTGTTTTTATTAACGACAACACTTACTATGTTGTTGTGAACACAATAGTCCAATATGCAAGGAAAGTCGAAAATATTGCAGCCCGTGCA AAATGGATCGATGGGGAGAGAATATTAACGGTGGAAGAACCTCCTGAAGTTGTCAGGGCTAGAAATGACAACTCTCATGGCACGAATTTCGTTGGTTCAC CTGAACCTATCTACGGGACTCAGTTCTTGCCTAGTAAGTTCAAGATTGCGGTTACTGTCCCTACTGATAACTCGGTCGACAGTTTAACGAACGACATTGG TGTCGTTGTAGTTTCTGACGACAATGGGGAGCCTCAAGGGTTCGATATTTACGTTGGTGGTGGTATGGGAAGGACAGACAGGCTCAAGACCACATTCCCG CGGCTAGCTGAACCGTTAGGCTATGTGCTGAAAGAGGACATTATCTATGCGGTCAAGGCTATTGTCGTGACTCAACGTGAACACGGGAGGAGAGATGATC GAAAGTACAGTAGAATGAAGTACTTGATCGACTTGTGGGGGGTCGAAAAGTTCAGAACCGTGGTTGAGCAGCAGTACTACGGGAAGAAATTCGAGCCGTT TCGTGAACTTCCCTGA
AA sequence Show only first row Show all	>Lus10014907 pacid=23152783 polypeptide=Lus10014907 locus=Lus10014907.g ID=Lus10014907.BGIv1.0 annot-version=v1.0 MGNCCASPGNSSPKNTKNSKEKGKNNKGSNPFFGTDYVVNDKKLYVLSEPTGRDISAHYDLGRELGRGEFGVTYLSTEMTTGDKYACKSISKKKLRTAID VEDVRREVEIMKHLPHHPNIVSIKDTYEDDSAVHIVMELCEGGELFDRIVARGHYTERAAAAVMRTIVEVVQMCHKHGVMHRDLKPENFLFANKKETSAL KAIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVIDFKRDPWPKVSDNAKDLVRKMLNP DPKQRLTAQQVLDHTWLQNAKKAPNVPLGETVRTRLKQFSMMNKLKKRALRVIAEHLSLEEVAGIKETFDMMDTSQRGKINIDELRVGLHKLGQQITDPD LQILMDAVSSLIPSSSVSAFLETNQAIPRCKLSSWSREQADIDGDGTLNYGEFVAITIHIKKMGNDEHLHKAFGFFDQNKTGYIEMEELRQALNDDIDTC SEDVLNAIMHDVDTDKDGRISYEEFATMMKAGTDWRKASRQYSRERFNSLSLKLMRDGSLQVVERKEPLEGVFINDNTYYVVVNTIVQYARKVENIAARA KWIDGERILTVEEPPEVVRARNDNSHGTNFVGSPEPIYGTQFLPSKFKIAVTVPTDNSVDSLTNDIGVVVVSDDNGEPQGFDIYVGGGMGRTDRLKTTFP RLAEPLGYVLKEDIIYAVKAIVVTQREHGRRDDRKYSRMKYLIDLWGVEKFRTVVEQQYYGKKFEPFRELP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10014907 [exp]	0	1
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10043432 [exp]	10.7	0.7975
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10006231 [exp]	10.9	0.8528
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10010161 [exp]	11.1	0.8048
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	12.4	0.8050
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10025284 [exp]	14.6	0.8373
AT5G52410			unknown protein		Lus10038854 [exp]	22.2	0.7759
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025226 [exp]	22.4	0.7656
AT1G22870			Protein kinase family protein ...		Lus10030346 [exp]	22.6	0.7749
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017748 [exp]	34.3	0.7649
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10005191 [exp]	34.3	0.7895

Compare expression of checked genes

Lus10014907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.