Plant FIBer expression Database

Lus10014908 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G21055 64 / 1e-14 PSBTN photosystem II subunit T (.1)
AT1G51400 59 / 2e-12 Photosystem II 5 kD protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027359
[exp]
110 / 7e-33 AT3G21055 81 / 3e-21 photosystem II subunit T (.1)
Lus10030132
[exp]
62 / 8e-14 AT1G51400 92 / 2e-25 Photosystem II 5 kD protein (.1)
Lus10009950
[exp]
62 / 1e-13 AT1G51400 94 / 3e-26 Photosystem II 5 kD protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G256900
[exp]
61 / 2e-13 AT1G51400 91 / 3e-25 Photosystem II 5 kD protein (.1)
Potri.009G052500
[exp]
57 / 5e-12 AT1G51400 96 / 3e-27 Photosystem II 5 kD protein (.1)
PFAM info
Representative CDS sequence
>Lus10014908 pacid=23152846 polypeptide=Lus10014908 locus=Lus10014908.g ID=Lus10014908.BGIv1.0 annot-version=v1.0
ATGGTGTCCATGATCATGCCAGCATCATCTTTCCTAGCCAAACCCTTCGTCGTCTCTCCCCGTAGAGGGATGACCGTCGTCGCCAGTGTATCGAAGGTGG
AGGCTGTGAAGGCCGACAAGGAAGAGAAGAAGAAGAAGAACAACGATGGCAGGAGGGACTTGGTGTTTGGTACAGCAGCAGCAGTAGCTTACTCCATTGC
AAGAGCTGCTCTGGCGGACGATGAGGAGCCGAAGCGTGGTACCGCTGCTGCCAAGAAGAAGTATGCTTCTGTCTGCGTCACGAACCCTACTGCTCGGATC
TGCCGTTACTGA
AA sequence
>Lus10014908 pacid=23152846 polypeptide=Lus10014908 locus=Lus10014908.g ID=Lus10014908.BGIv1.0 annot-version=v1.0
MVSMIMPASSFLAKPFVVSPRRGMTVVASVSKVEAVKADKEEKKKKNNDGRRDLVFGTAAAVAYSIARAALADDEEPKRGTAAAKKKYASVCVTNPTARI
CRY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G51400 Photosystem II 5 kD protein (.... Lus10014908
[exp]
0 1
AT3G47070 unknown protein Lus10001204
[exp]
1.4 0.9777
AT3G21055 PSBTN photosystem II subunit T (.1) Lus10027359
[exp]
2.0 0.9729
AT1G18730 PnsB4, NDF6 Photosynthetic NDH subcomplex... Lus10001645
[exp]
2.4 0.9693
AT1G64770 PnsB2, NDH45, N... Photosynthetic NDH subcomplex... Lus10007429
[exp]
5.5 0.9539
AT2G23580 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ES... Lus10005402
[exp]
6.0 0.9515
AT3G05410 Photosystem II reaction center... Lus10029903
[exp]
6.2 0.9399
AT3G63140 CSP41A chloroplast stem-loop binding ... Lus10014669
[exp]
6.6 0.9600
AT2G22780 PMDH1 peroxisomal NAD-malate dehydro... Lus10012459
[exp]
6.9 0.9511
AT1G64770 PnsB2, NDH45, N... Photosynthetic NDH subcomplex... Lus10010671
[exp]
7.5 0.9515
AT3G18870 Mitochondrial transcription te... Lus10026325
[exp]
7.5 0.9341

Lus10014908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.