Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71400 328 / 5e-99 AtRLP12 receptor like protein 12 (.1) AT3G05370 323 / 7e-97 AtRLP31 receptor like protein 31 (.1) AT1G47890 320 / 7e-95 AtRLP7 receptor like protein 7 (.1) AT3G05650 308 / 2e-91 AtRLP32 receptor like protein 32 (.1) AT3G05660 304 / 6e-90 AtRLP33 receptor like protein 33 (.1) AT3G11010 303 / 1e-89 AtRLP34 receptor like protein 34 (.1) AT1G45616 293 / 3e-85 AtRLP6 receptor like protein 6 (.1) AT5G27060 292 / 5e-85 AtRLP53 receptor like protein 53 (.1) AT5G25910 286 / 5e-84 AtRLP52 receptor like protein 52 (.1) AT3G11080 282 / 3e-81 AtRLP35 receptor like protein 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032335 [exp] 865 / 0 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10024721 [exp] 774 / 0 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10011039 [exp] 568 / 0 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10027580 [exp] 424 / 1e-138 AT5G62230 194 / 4e-53 ERECTA-like 1 (.1.2) Lus10011064 [exp] 412 / 5e-129 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10003389 [exp] 343 / 1e-102 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10003387 [exp] 337 / 1e-100 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10006825 [exp] 336 / 4e-100 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10014905 [exp] 309 / 4e-96 AT1G47890 240 / 4e-70 receptor like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G013435 [exp] 379 / 5e-117 AT3G11080 367 / 6e-112 receptor like protein 35 (.1) Potri.012G027400 [exp] 370 / 9e-114 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.016G127000 [exp] 369 / 6e-113 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.012G010445 [exp] 369 / 9e-113 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2) Potri.012G005600 [exp] 369 / 2e-112 AT1G45616 379 / 3e-115 receptor like protein 6 (.1) Potri.012G008911 [exp] 367 / 2e-112 AT3G05650 303 / 5e-89 receptor like protein 32 (.1) Potri.001G400500 [exp] 365 / 2e-112 AT1G45616 463 / 2e-148 receptor like protein 6 (.1) Potri.016G127101 [exp] 366 / 1e-111 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.001G389100 [exp] 364 / 4e-111 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.011G054500 [exp] 363 / 7e-111 AT5G27060 352 / 6e-106 receptor like protein 53 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014910 pacid=23152726 polypeptide=Lus10014910 locus=Lus10014910.g ID=Lus10014910.BGIv1.0 annot-version=v1.0 ATGGCAGATAAGTCACTTTTCAGTTTTGTCATAAATATTATTGCACTCTGTCATCTCTACTCCTTTGTTTCTCCCACTCAAATCCGTTGCCTAAAGCATG ATAGATCACTTCTCTTGCAACTCAAACACGAAATCACCACCGGTTGTACTTTCCTGCCACGTCCGATGTTCAAAGTTTGGTCATGGAACGACACCGGAAA TCAAAGAGATTGCTGCTTGTGGGATGGAGTCACTTGTGATGCCCAATCGGGTCATGTTGTCGGCCTCGATCTCAGTAGAAGCTCCATTTGTATTTATGAT ATCAACAGCTCCAGCAGCCTTTTCCACCTTCGTCATCTCCAACGCCTTAGCCTTGCTGATAACTACTTGTATGGTTCACCTTTCCCATATGGTTTCAGTA ACCTCTCCAGCTTGACCCATCTCGACCTTTCAAATTCAGGATTTCAAGGTCCAATCCCAGGGTATGAAATTTCAACACTTGGAATGTTGGTTTCCCTTGA TCTTTCTTATACTTATGGTTCAAGTGGAGGTGAAGACATGGAAAAGCTAGTCACAAACCTGACGAAACTCAGAGTGCTCCGTTTGGATACTTTAGATCTA TCGCGTGGCTTTAGCAACAAGTCATTGTCATTGCTACCTGAAACAATTCGGGAGCTGAGCTTGAGTAATTGTAACCTAAGCGGAGAAGTAGTTCAATTTC CATCCCACCTGAGATCCCTCACTCATTTGGTGTTGTTTGACAATTATAACCTTCCCTGGAATGTATCTGGCTATTCCTTCTTAGTTCAGTTTCCTCATCT CATACATCTGGATCTTTCCGGGTGTCGGTTGCATGGAACATTGGCCAGTAGTGTTTTCTTGATACCCAGTCTCCAATACCTTGATGTTTCCGACAACAAT CTTCTCACTGGTTCTTTCCCCGAATTCCCTATTAGCACCAGTAGTCCACTACAAACCATCGACCTTTCCTTTACAGATTTTTCTGGAAAAATTCCTAATT CCATAAACAATTTAGTGTCTTTGCAGGTTTTGCAACTTCTTTTTTGTCAATTTTATGGAAGATTCCCCAATAGTTTTTTCTTCATGCCCAATCTCAAACT CCTTGATGTTTCCTCAAACCCTCTTCTCACTGGTACTTTGCCCGAATTTTCTAACTTGGTTCTCTCTACATGCGGCTTTACTGGTCTTGTCCCATCTTCG ATTCGCAATCTCACTGGATTGGATGCTCTTGTGTTGTCTGGGAACAACTTCAATGGTCCACTCCCCATACTGGCTTCATCTAACATGATTCAATCTCTCG ACCTTTCGTCCAATAATTTCAGTGGTACCATTCCCCTATCTTACGGTCACTTTCACAATCTTGATGTGTTGGACTTGAGCAATAACCATATAGGAGGGCA GGTTCCACATTCTTTATTCAATAACAAGAGCGATGGATATACCTTGATCTACCTTGATCTTTCAAGTAACAAGATCCAGGGAAATATCTCTCCATCCATA TGTGATTTGCAATCCTTACAGTTCCTAGATCTCTCCGCTAATCTTCTCAATGGTTCCATTCCACCATGTTTGGCTTCTCTCCCCTATCTTAGTGTGCTAA GCTTAAGAAATAATCAATTAAGCGGGATGCTCCCAACTGGTTTTAGAGACAAATGCTTTTTGGCATCTCTTGATGTGAATCAGAACCAACTCCATGGTCA ACTCCCACGATCTCTACGGTTGTGTACAAATCTGCATGTTGTAGATGTTGGAAAAAACTACTTGACTGGGAAGTTTCCAGTCTGGTTGGAGGGTTTACAA TATCTAAGAGTTTTGGTGTTGCACTCCAATCAATTTGGCGGCTCTATCATTGATTCCCACAAAGTGACTGCCTTTCAGGATCTGCAAATAATTGATGTTT CTTCAAACAAATTTGTGGGTAAGATGCCTTCAGGATGGTTTACAAATAGAATGATGCAGCAAGATCCAGACAGAGATGCCTTCCCTAGTTACTTGAGCGA TGCATCATTTCAATTTTCTTATGGTGAACACTATTACCGAGATCCAGTAACGGTAACCGTCAAAGGAATTGAAAGGGAGTACGATAAGATCCTCACCATC TTCTTTCTACTCGATGTATCCAACAACAACTTTACTGGCGAAATTCCCGAAGCAATATGTCATCTGGAGGCACTACAGCTGCTCAACCTTTCCAACAACC ATTTACAGCTAAGGCACTTGGAATCACTCGACTTTTCATCAAACAACCTCTCGGGCACCATCCCCTCGCAACTTGCCCAGCTCACTTTCCTATCAGTTTT CAACACCTCGCATAATTCTCTAAGCGGGGAGATACCTCGTGGGAGACAGTTTGATACTTTCGAGGCAAATTCTTATCTAGGGAATCCTGAATTGTGTGGC AAACCATTGCCTAAGCCTTGCTTTGAAGTGCCGACAACTAATAATTCGGCCAAGCACCCAACAGGCGAAGGAGGCCAAAATGTGATTGATTGGAATTGTT TCCGAGATGGGATCGCTTGTGGAGGAGGATCAGGTGTTATCCTTGGAATTCTGGTCGCTAAATTTGTGTTTGGAAATCCCTTTGTCCCACCAAAAACAAG AAGAGTTCGTCGTATCGCAGTTCGTCAATGGCGGAACTAG
AA sequence Show only first row Show all	>Lus10014910 pacid=23152726 polypeptide=Lus10014910 locus=Lus10014910.g ID=Lus10014910.BGIv1.0 annot-version=v1.0 MADKSLFSFVINIIALCHLYSFVSPTQIRCLKHDRSLLLQLKHEITTGCTFLPRPMFKVWSWNDTGNQRDCCLWDGVTCDAQSGHVVGLDLSRSSICIYD INSSSSLFHLRHLQRLSLADNYLYGSPFPYGFSNLSSLTHLDLSNSGFQGPIPGYEISTLGMLVSLDLSYTYGSSGGEDMEKLVTNLTKLRVLRLDTLDL SRGFSNKSLSLLPETIRELSLSNCNLSGEVVQFPSHLRSLTHLVLFDNYNLPWNVSGYSFLVQFPHLIHLDLSGCRLHGTLASSVFLIPSLQYLDVSDNN LLTGSFPEFPISTSSPLQTIDLSFTDFSGKIPNSINNLVSLQVLQLLFCQFYGRFPNSFFFMPNLKLLDVSSNPLLTGTLPEFSNLVLSTCGFTGLVPSS IRNLTGLDALVLSGNNFNGPLPILASSNMIQSLDLSSNNFSGTIPLSYGHFHNLDVLDLSNNHIGGQVPHSLFNNKSDGYTLIYLDLSSNKIQGNISPSI CDLQSLQFLDLSANLLNGSIPPCLASLPYLSVLSLRNNQLSGMLPTGFRDKCFLASLDVNQNQLHGQLPRSLRLCTNLHVVDVGKNYLTGKFPVWLEGLQ YLRVLVLHSNQFGGSIIDSHKVTAFQDLQIIDVSSNKFVGKMPSGWFTNRMMQQDPDRDAFPSYLSDASFQFSYGEHYYRDPVTVTVKGIEREYDKILTI FFLLDVSNNNFTGEIPEAICHLEALQLLNLSNNHLQLRHLESLDFSSNNLSGTIPSQLAQLTFLSVFNTSHNSLSGEIPRGRQFDTFEANSYLGNPELCG KPLPKPCFEVPTTNNSAKHPTGEGGQNVIDWNCFRDGIACGGGSGVILGILVAKFVFGNPFVPPKTRRVRRIAVRQWRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10014910 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005016 [exp]	1.0	0.9685
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005017 [exp]	1.4	0.9641
AT3G47570			Leucine-rich repeat protein ki...		Lus10011388 [exp]	1.7	0.9321
AT5G51160			Ankyrin repeat family protein ...		Lus10029007 [exp]	3.5	0.8996
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10016635 [exp]	3.5	0.9258
AT5G10770			Eukaryotic aspartyl protease f...		Lus10000265 [exp]	5.5	0.9209
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013384 [exp]	6.5	0.9160
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019036 [exp]	6.9	0.9073
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029945 [exp]	7.1	0.9058
AT4G01570			Tetratricopeptide repeat (TPR)...		Lus10030167 [exp]	7.9	0.8763

Compare expression of checked genes

Lus10014910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.