Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08790 121 / 2e-31 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G04070 119 / 4e-30 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G77450 115 / 2e-29 NAC ANAC032 NAC domain containing protein 32 (.1) AT4G27410 115 / 4e-29 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G01720 114 / 7e-29 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G52890 114 / 2e-28 NAC ANAC019 NAC domain containing protein 19 (.1) AT5G63790 113 / 3e-28 NAC ANAC102 NAC domain containing protein 102 (.1) AT3G15500 113 / 3e-28 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT1G61110 113 / 4e-28 NAC ANAC025 NAC domain containing protein 25 (.1) AT1G69490 111 / 4e-28 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027357 [exp] 647 / 0 AT3G04070 172 / 3e-50 NAC domain containing protein 47 (.1.2) Lus10003847 [exp] 150 / 1e-41 AT1G61110 196 / 3e-60 NAC domain containing protein 25 (.1) Lus10002083 [exp] 148 / 7e-39 AT5G08790 225 / 7e-69 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10003269 [exp] 130 / 5e-34 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2) Lus10006547 [exp] 128 / 4e-33 AT3G04070 337 / 4e-114 NAC domain containing protein 47 (.1.2) Lus10020883 [exp] 124 / 4e-32 AT5G08790 320 / 6e-110 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10033493 [exp] 123 / 5e-32 AT5G08790 315 / 4e-108 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10042531 [exp] 123 / 2e-31 AT3G04070 303 / 4e-101 NAC domain containing protein 47 (.1.2) Lus10018142 [exp] 120 / 8e-31 AT1G01720 401 / 7e-142 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G052200 [exp] 157 / 7e-43 AT4G27410 188 / 1e-55 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.009G052300 [exp] 144 / 6e-39 AT1G01720 179 / 2e-53 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.018G095000 [exp] 140 / 2e-37 AT1G01720 187 / 3e-56 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G256600 [exp] 138 / 6e-36 AT3G04070 190 / 7e-56 NAC domain containing protein 47 (.1.2) Potri.007G099400 [exp] 130 / 1e-34 AT1G01720 366 / 6e-128 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G069500 [exp] 130 / 2e-34 AT1G01720 357 / 3e-124 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.013G054000 [exp] 124 / 1e-31 AT3G04070 338 / 9e-115 NAC domain containing protein 47 (.1.2) Potri.011G046700 [exp] 122 / 3e-31 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.002G081000 [exp] 119 / 1e-30 AT1G01720 416 / 5e-148 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.019G031400 [exp] 119 / 4e-30 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10014911 pacid=23152786 polypeptide=Lus10014911 locus=Lus10014911.g ID=Lus10014911.BGIv1.0 annot-version=v1.0 ATGGAGTCTCCGGCGAGTCCTCCAAAGAAGCGGGCTACGGTGCAAATCAGCTCAGCTTCCTCTGTGCCCGAACTCGCCGCCGGCAGCAGTAGCAGCATCA CTCCGGCGCCGGCGAACACGGCAGCTGTGTTGCCGAATGATGAACTAGAGGAGCCCGAGGAGGATGAGGAGCTCATCAACCAGTATCTGATCAAAAAGAT TTCTGGCCAAGCACTGCCGACGAACAAGATCGTTGACGTCAATCTTTACCAGTATAATCCCGAGACGGTCGTCGAGAAGTACAGGCCTTGCGGGGAGAGG GAGTGGTATTTCTTTACGCCGAGGGATAGGAAGTACAAAAACGGGGAGAGGCCAAACAGGGCTGCGGGAGATGGGAAAGCTCTGGTTTTCTACAGAGGGA AGCAACAGAAACAAGACGGCATCAAAACCAATTGGATAATGCACGAGTACAGAGTGAATCCTAGTACAGTTGAGAGTCTTCCTCGAGTTTCTAGAGGTGA CGATGACATGAGGCTGGACGATTATGTGCTATGCAGGATCTACAGGAAACCTGGGAAATCTTGCGATTATAAGCAACCTCAAAAAAGAGAGAACAACTGC ACTGCTGCTGATGCTGATGCTGATGCCGATGCCTCACTTCAGCAGCCTGATGATCATGTTTCTGAACCTGCTACTAGCTCTGTGAATCATAGCTGCCAAA CTTCCCATCATCCAGTGGCTATGGATACCGGAATGGAATCTGACAGCAAGCGACCTCCACACTCCGAGAACTCCGATGATAATTTCTCACTTCACCTGCC TGATCCTGAAGCTGGCATGAGATCTTCGAACCATGGCTGCCAAACTGACTTTCTAATGGCTATGGAATCTGACTGCAGGCAACCTCCAGATAGAGAACCG TTTTGCTGGAACAGTTTGAATCATGGCTACCAACAAACTGTCCATCCAATGGCCATGGCTGATGGAACAAGTAGTCTTCTTCAGCATCCTTATTCTCATC TTCACCATGCTCTTCCAACTATCAGCAGCTACCTTCCAATGGATCCAATGGCCATGGCTGATGCTAGCAGTTTGAGAAGAAGCAGTTACTACCCGCCTAC AGAAGCTCTTCGCCCTCTAGATGACTTCAACAGCATGTGGAAGATTCCGTACGGTTTGGGTCCTGATCCCTTGGTTAACTTCGAGAGTGAATGGATCCAC GATGATGATAAGGTGGATCCATTCGCCCATCCCATGTCGAAACGATAA
AA sequence Show only first row Show all	>Lus10014911 pacid=23152786 polypeptide=Lus10014911 locus=Lus10014911.g ID=Lus10014911.BGIv1.0 annot-version=v1.0 MESPASPPKKRATVQISSASSVPELAAGSSSSITPAPANTAAVLPNDELEEPEEDEELINQYLIKKISGQALPTNKIVDVNLYQYNPETVVEKYRPCGER EWYFFTPRDRKYKNGERPNRAAGDGKALVFYRGKQQKQDGIKTNWIMHEYRVNPSTVESLPRVSRGDDDMRLDDYVLCRIYRKPGKSCDYKQPQKRENNC TAADADADADASLQQPDDHVSEPATSSVNHSCQTSHHPVAMDTGMESDSKRPPHSENSDDNFSLHLPDPEAGMRSSNHGCQTDFLMAMESDCRQPPDREP FCWNSLNHGYQQTVHPMAMADGTSSLLQHPYSHLHHALPTISSYLPMDPMAMADASSLRRSSYYPPTEALRPLDDFNSMWKIPYGLGPDPLVNFESEWIH DDDKVDPFAHPMSKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10014911 [exp]	0	1
AT5G16140			Peptidyl-tRNA hydrolase family...		Lus10031901 [exp]	7.8	0.8783
AT2G32180		PTAC18	plastid transcriptionally acti...		Lus10035307 [exp]	16.4	0.8650
AT3G10405			unknown protein		Lus10037959 [exp]	18.3	0.8747
AT2G32180		PTAC18	plastid transcriptionally acti...		Lus10030017 [exp]	19.0	0.8730
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10042587 [exp]	23.0	0.8740
AT4G14740			Plant protein of unknown funct...		Lus10002798 [exp]	28.4	0.8626
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10002712 [exp]	30.7	0.8696
					Lus10023773 [exp]	31.9	0.8647
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10008131 [exp]	32.6	0.8701
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Lus10025601 [exp]	37.5	0.8639

Compare expression of checked genes

Lus10014911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.