Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51450 383 / 6e-129 ASH2R, TRO ARABIDOPSIS Ash2 RELATIVE, TRAUCO (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027355 [exp] 410 / 1e-143 AT1G51450 413 / 2e-144 ARABIDOPSIS Ash2 RELATIVE, TRAUCO (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G256000 [exp] 426 / 2e-146 AT1G51450 417 / 4e-142 ARABIDOPSIS Ash2 RELATIVE, TRAUCO (.1) Potri.009G051400 [exp] 423 / 3e-145 AT1G51450 402 / 2e-136 ARABIDOPSIS Ash2 RELATIVE, TRAUCO (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00622 [flax] [poplar] SPRY SPRY domain
Representative CDS sequence Show only first row Show all	>Lus10014912 pacid=23152831 polypeptide=Lus10014912 locus=Lus10014912.g ID=Lus10014912.BGIv1.0 annot-version=v1.0 ATGGATTCCCTTCTCTCCACCTACAGAGACGAGGAGATGTCATCAGCTACCGAGGAGGAAGAAGCAAGTCAGCCATCCTCCGTCGTCCCCGACAACAATC GGGACGACAATCCTCCTCTTCTTCCGCCGCCATCACCTCCGCCTCCTGCCGCCGTCTCCATTGAGATTACTCCAGAGCAAGATTCCGTAGTTAATAAGAG TGATGACAAGCAGCAGGAAGTCGCTGCTTCCGGATCCGTCTCGGAATCGGACCCTTCGACGTCCAACGACACGGAGAAACGTTCTGTGAAGGAAGGAGAG GAGGAGGTAGAGGATGAAGAGGAACGGCCTAGTAAGAAGCTGAAGCAGACGGAGCTTCTCGAGGAGGTGAAGGAGGAAGCAGCAGAAGAGGAGGAACAAC TGCGACAGATCGAAGCGGTGGTGATTACAGCGGCGACGCCAGTAGACGAATCTGTTTCGAACGGAAATGGCGATGTTAGCGTTGAGGAGGAGACTGATAA ATCTACTCCGTCTGCTGCTACTCCTGCTGCTGCAGCAACCACGCAAGCTGCTACAGCTAAGAAGAAGTCGAAGAAGAAGACTAACAACAACGTGTGGTCG ACGAGATCTACACGGAAGGGGAAGAAGAAGACGAAGCCTAATCCGCAGAACACTCCAGCTACAGACACTGTATTAATCACTCCGGTTCCAAGGTTTCCTG ACAAGAATGATGACTCTCCGGAGATGAAAATTTGCTTGTCGAAGGTGTACAAGGCGGAGAAAGTTGAGCTGAGCGAGGACAGGATGAGTGCAGGGAGTAC CAAGGGTTACAGAATGGTGAGAGCGACTAGAGGAGTTTGTGAAGGAGCTTGGTACTTTGAGATGAAGGTGGAGAGCTTGGGAGAGACTGGGCATACACGA CTAGGATGGTGTACTGAGAAAGGGGACTTGCAGGCTCCAGTTGGCTACGATGGGAACAGCTATGGGTATAGAGATATTGATGGGAGTAAGATTCACAAGG CGTTGAGGGAGAAGTATGGGGAGGAAGGGTATAAAGAAGTGGATGTAATTGGATTCTATATTAGCTTGCCGGATGGGGAGGCATATGCTCCCAAGCCACC TCGTTTGGTTTGGTATAAAGGCCAGAGGTATCTCTGTGCTCCTGATGCCAAGGAGGATCCTCCTAAGATTATACCAGGGGTTGCATTCAAGGATTTATAT GGCGGGCGCTACTACCCTGCTGCATCAATGTACACACTTCCCAATCAACAGAATTGTCTTGTCAAGTTTAATTTTGGTCCAGACTTCGATTTTTTCCCGG CGGATTTTGGTGAGCGTCCCATGCCAAGGCCCATGATTGAAGTTCCTTATCATGGATTTGATGCTCGTGTTGAGAATGGCATGCCCGAGGAGAAGAAACC ATAG
AA sequence Show only first row Show all	>Lus10014912 pacid=23152831 polypeptide=Lus10014912 locus=Lus10014912.g ID=Lus10014912.BGIv1.0 annot-version=v1.0 MDSLLSTYRDEEMSSATEEEEASQPSSVVPDNNRDDNPPLLPPPSPPPPAAVSIEITPEQDSVVNKSDDKQQEVAASGSVSESDPSTSNDTEKRSVKEGE EEVEDEEERPSKKLKQTELLEEVKEEAAEEEEQLRQIEAVVITAATPVDESVSNGNGDVSVEEETDKSTPSAATPAAAATTQAATAKKKSKKKTNNNVWS TRSTRKGKKKTKPNPQNTPATDTVLITPVPRFPDKNDDSPEMKICLSKVYKAEKVELSEDRMSAGSTKGYRMVRATRGVCEGAWYFEMKVESLGETGHTR LGWCTEKGDLQAPVGYDGNSYGYRDIDGSKIHKALREKYGEEGYKEVDVIGFYISLPDGEAYAPKPPRLVWYKGQRYLCAPDAKEDPPKIIPGVAFKDLY GGRYYPAASMYTLPNQQNCLVKFNFGPDFDFFPADFGERPMPRPMIEVPYHGFDARVENGMPEEKKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Lus10014912 [exp]	0	1
AT2G32910			DCD (Development and Cell Deat...		Lus10001728 [exp]	5.0	0.8454
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10008130 [exp]	6.5	0.8419
AT1G64260			MuDR family transposase (.1)		Lus10038037 [exp]	7.4	0.8335
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034383 [exp]	7.7	0.8416
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10013167 [exp]	9.6	0.8353
AT3G26780		MEF14	mitochondrial editing factor 1...		Lus10031987 [exp]	12.2	0.8267
AT3G57120			Protein kinase superfamily pro...		Lus10016113 [exp]	12.4	0.7645
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10004749 [exp]	13.6	0.8301
AT3G03570			Protein of unknown function (D...		Lus10005664 [exp]	24.6	0.8334
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10018357 [exp]	29.4	0.8299

Compare expression of checked genes

Lus10014912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.