Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50450 539 / 0 Saccharopine dehydrogenase (.1) AT1G51500 197 / 6e-54 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 192 / 3e-52 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT3G21090 187 / 2e-50 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G17840 177 / 6e-47 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT3G21080 87 / 6e-19 ABC transporter-related (.1) AT2G28070 91 / 1e-18 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027349 [exp] 751 / 0 AT1G50450 611 / 0.0 Saccharopine dehydrogenase (.1) Lus10027354 [exp] 338 / 8e-106 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 266 / 4e-79 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 221 / 1e-62 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10018268 [exp] 214 / 2e-61 AT1G17840 849 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10040644 [exp] 217 / 1e-60 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10009959 [exp] 214 / 1e-59 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009961 [exp] 209 / 5e-58 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027353 [exp] 185 / 7e-50 AT3G21090 661 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G050100 [exp] 598 / 0 AT1G50450 607 / 0.0 Saccharopine dehydrogenase (.1) Potri.009G051300 [exp] 239 / 8e-69 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255900 [exp] 235 / 2e-67 AT3G21090 929 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255800 [exp] 201 / 3e-55 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051200 [exp] 201 / 5e-55 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.017G155300 [exp] 181 / 3e-48 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 178 / 4e-47 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.016G056600 [exp] 161 / 2e-41 AT3G21090 744 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056700 [exp] 150 / 5e-38 AT3G21090 739 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.005G073050 [exp] 149 / 3e-37 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0063 [flax] [poplar] NADP_Rossmann PF03435 [flax] [poplar] Sacchrp_dh_NADP Saccharopine dehydrogenase NADP binding domain
Representative CDS sequence Show only first row Show all	>Lus10014913 pacid=23152744 polypeptide=Lus10014913 locus=Lus10014913.g ID=Lus10014913.BGIv1.0 annot-version=v1.0 ATGGCGGGAGCATTGCTGGGAAGATTCGCGATAACTGCGTGCTTGAAAGAGAACCCAATCAGCAATGGAGACGAGAAGTTGAAAGGGAAGAAGGTTCTGG TTCTGGGCGGAACGGGTCGGGTCGGAGGATCCACCGCCATTGCTCTTTCCAAGCTATGCCCTCACCTTTCAATCGCCATTGGTGGCCGGAACAGGGAAAA GGGTGAAGCAATGGTGGATACTTTGGGGAAGAAGAACTCTTCATTTGTTGAGGTTGATATTGACAATGTGGACTCACTGGAAGCGGCTGTGAAAGGTGTG GATCTTGTGGTTCATGCTGCTGGACCTTTCCAGCAGACTGATAAATGCCCTGTGCTTGAAATGGCTATAGAGACCAAGACTGCATATGTCGACGTTTGTG ATGACACGAGCTATGCTCTTCGAGCTAAATCAATCAAGGATCGAGCAGTAGCTGCAAATGTTCCTGCAGTAACGACTGCTGGCATCTATCCGGGAGTGAG CAATTTGATGGCAGCAGAGCTCGTCCGAGTTGCGAGAAGTAAGAACGATCAAGAGCCTGAAAGGCTAAGGTTTTACTACTACACAGCAGGAAGTGGAGGT GCTGGACCAACTATCTTAGCTACTAGTTTCTTACTTCTTGGTGAAGATGTTGTTGCATATAATAAAGGAGAAAAGATCAAGTTAAAGCCATATAGTGGGA TGATCAACATCGATTTCGGGAAGGGAATCGGAAGCAGAGATGTTTATCTGCTGAATTTACCAGAGGTGCACAGTGCTCATGAGGTGTTGGGAATACCGAC TGTGAGTGCTCGATTCGGAACTGCACCTTTCTTCTGGAACTGGGGAATGGAAATCATGACAAATCTTCTTCCTCAGGAAGTCCTGAAGGACAGAAGCAAA GTACAAGAAATGGTGCAGTTGTTCGATCCTATCGTTCGTGCAGTTGATGGTTTTGCTGGAGAGCGCGTCGCAATGAGGGTTGACTTAAAGTGCACAGATG GACGCGATACCCTTGGCTTGTTTAGCCACAAGAGCCTCTCTGTATGTGTGGGAACAGCAACAGCAGCTTTCGCGCTAGCAGTGCTCGAGGGAAGCACTCA GCCGGGAGTTTGGTTTCCGGAAGAGCCGGAAGGGATTGCATTAGAGGCAAGGGAATTGCTGCTGAAGAGAGCTGCAGATGGTGCCATGAGTTTCGTAATG AACAAGCCTCCTTGGATGGTGGAAACGAACCCTAAAGAGGTTGGATTAGGAATCTATTTCTTTGCTCAAGCTGGATTCCCTTGTCCAATTCGGAGAAATC CTTCCGATCATTTCCTAAGCTGCATCAATTCAGACTTCGACCAGATTGCACTGCCCTTGATGGGATCTAAAAGGGACATTGAGAAACCATTAGAACCTTT CAACCGCTTACCCACAACAGAGATTAAGGCAATGCTAATCAAGGAGTACAGGCAATCCAACCATGCAGTCAATGAAAATGACAGAATGAAGAACATTCTA GCTACAAAGGGAACAGTGATTAAAAGGAAACTGAAAAATAAATTGAATTGGTGGAAGCAACTCTGCACACTGACTCAGAGATCTTATGTGAACATGTGGA GGGATTTTGGCTACTACTGGGTTAGGATGGGAATCTATATAGCCTTGTCGATATGTGTTGGTACCATCTTCTTCGACATTGGAAGAAGTGCTTCAATCTT CGGACAAGGATCCTGTGACGGATTCATTGCAGGTTTCATGACATTCATGTCCATCGGAGGCTTTCCTTCCTTCATCGAGGAATTGGAGGGAATTCTGCTG ATGACTTCAGGATTCTTTCGTTTTCTGCCTGATCTTCCTAAGGTTTTCTGGCGTTACCCAGTCTCTTACATCAACTTTGCTGCATGGGTACTACAGGGTG CATACAAAAATGACTTGATTGGGCAAGAGTTTGACCCTTTAATACCTGGTGGGCCGAAGCTGAAAGGTGATGTGTTCCTGACCACGGTGCTTGGTATCGA TCTCGGATATTCAAAGTGGTGGGACTCAGCCGCAGTGATAGCTATTCTAATCACTTTTCGAGTTCTCTTTTATGCCATCCTCAAGTTGAAGGAGAGATCT TTACCAGTGCTGAGGGAGATTTATGCCAGGAAAACGCTGCATCATCTCAAGAAGAGGCCATCGTTCAGGAAGAATTCGCATTCCCCTTAA
AA sequence Show only first row Show all	>Lus10014913 pacid=23152744 polypeptide=Lus10014913 locus=Lus10014913.g ID=Lus10014913.BGIv1.0 annot-version=v1.0 MAGALLGRFAITACLKENPISNGDEKLKGKKVLVLGGTGRVGGSTAIALSKLCPHLSIAIGGRNREKGEAMVDTLGKKNSSFVEVDIDNVDSLEAAVKGV DLVVHAAGPFQQTDKCPVLEMAIETKTAYVDVCDDTSYALRAKSIKDRAVAANVPAVTTAGIYPGVSNLMAAELVRVARSKNDQEPERLRFYYYTAGSGG AGPTILATSFLLLGEDVVAYNKGEKIKLKPYSGMINIDFGKGIGSRDVYLLNLPEVHSAHEVLGIPTVSARFGTAPFFWNWGMEIMTNLLPQEVLKDRSK VQEMVQLFDPIVRAVDGFAGERVAMRVDLKCTDGRDTLGLFSHKSLSVCVGTATAAFALAVLEGSTQPGVWFPEEPEGIALEARELLLKRAADGAMSFVM NKPPWMVETNPKEVGLGIYFFAQAGFPCPIRRNPSDHFLSCINSDFDQIALPLMGSKRDIEKPLEPFNRLPTTEIKAMLIKEYRQSNHAVNENDRMKNIL ATKGTVIKRKLKNKLNWWKQLCTLTQRSYVNMWRDFGYYWVRMGIYIALSICVGTIFFDIGRSASIFGQGSCDGFIAGFMTFMSIGGFPSFIEELEGILL MTSGFFRFLPDLPKVFWRYPVSYINFAAWVLQGAYKNDLIGQEFDPLIPGGPKLKGDVFLTTVLGIDLGYSKWWDSAAVIAILITFRVLFYAILKLKERS LPVLREIYARKTLHHLKKRPSFRKNSHSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50450			Saccharopine dehydrogenase (....		Lus10014913 [exp]	0	1
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Lus10015688 [exp]	1.4	0.9106
AT1G50450			Saccharopine dehydrogenase (....		Lus10027349 [exp]	1.4	0.9411
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Lus10018055 [exp]	5.5	0.9087
AT3G02060			DEAD/DEAH box helicase, putati...		Lus10041506 [exp]	9.1	0.8387
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10006037 [exp]	9.9	0.8855
AT5G59770			Protein-tyrosine phosphatase-l...		Lus10040862 [exp]	10.5	0.8416
AT5G08050			Protein of unknown function (D...		Lus10040515 [exp]	13.0	0.8875
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10031537 [exp]	13.0	0.8990
AT1G06690			NAD(P)-linked oxidoreductase s...		Lus10016327 [exp]	15.6	0.8999
AT1G32080		AtLrgB	membrane protein, putative (.1...		Lus10012137 [exp]	16.1	0.8898

Compare expression of checked genes

Lus10014913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.