Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21100 150 / 7e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G12440 134 / 1e-33 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) AT3G51950 121 / 1e-29 C3HZnF Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT1G51520 118 / 1e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G63450 92 / 6e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT3G52980 65 / 3e-11 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1) AT2G05160 60 / 2e-09 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT1G51530 50 / 2e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019044 [exp] 305 / 4e-97 AT3G51950 341 / 4e-110 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10027351 [exp] 282 / 5e-93 AT3G21100 235 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039575 [exp] 178 / 1e-49 AT3G51950 427 / 3e-144 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10005319 [exp] 171 / 6e-47 AT3G51950 420 / 2e-141 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10027350 [exp] 147 / 8e-39 AT3G21100 327 / 4e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014915 [exp] 146 / 3e-38 AT3G21100 384 / 7e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10005023 [exp] 124 / 2e-30 AT3G21100 380 / 4e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019042 [exp] 123 / 6e-30 AT3G21100 368 / 6e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10009964 [exp] 119 / 1e-29 AT3G51950 215 / 3e-64 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G204300 [exp] 217 / 2e-63 AT3G51950 342 / 1e-109 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G020300 [exp] 203 / 4e-58 AT3G51950 330 / 1e-104 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.009G050700 [exp] 202 / 4e-58 AT3G51950 362 / 4e-117 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G255532 [exp] 167 / 4e-45 AT3G51950 347 / 8e-112 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G255400 [exp] 162 / 2e-43 AT3G21100 338 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G050600 [exp] 148 / 1e-38 AT3G21100 360 / 4e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G221100 [exp] 79 / 2e-15 AT2G05160 469 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.014G165500 [exp] 76 / 2e-14 AT2G05160 513 / 8e-178 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.001G276300 [exp] 64 / 1e-11 AT5G12440 80 / 3e-17 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10014914 pacid=23152798 polypeptide=Lus10014914 locus=Lus10014914.g ID=Lus10014914.BGIv1.0 annot-version=v1.0 ATGGATTCCTACGAAGCTACCAAGACAGTCTTCTCGAGGATCCAAGCCATGGATCCAGACAACGCATCCAAAATCATGGGCTACCTTCTGTTGCAGGATC AAGGAGACAACGAGATGATTCGGCTTGCCTTTGGACCTGAATCTCTGCTCCATAACTTAATCCTTCAGGCCAAATCTCACTTGGGATTGCCAATTTCTCC GACGAATAGTAGTAGCTCGTCTTCTTCTTCGAATTCGAATCCGTCGACTCCTTCTTCCCCGTTTTTGAGCTCGCCGAGGCCGAGAATCTCTTCCAGCTCG CTTTCCTACGCCGGTAATCAATCTGGTCATAGTCAGAACGGTAACGGCGTTGGGTCTTTCCCTTACGGTGATTTGGGGGACGGTGACCACCAATACTCTT TCCTCAACGAGTCCGGCAAACATGCAGACCAGTTGTTCGATAAAATTCCTGACTCAGCTCTGTTCAGTCCAACGGGCGACGCCACTTCCCATTTCCACCG CCGGAGCTACTCCGTTCCGGGAGTCAACTTCGCCGCCGACGGTTGGAAGCCGTGTCTGTACTACGCCAAGGGATTCTGCAAGAACGGAGCCACCTGCAAG TTCCTCCACCACGGCGGCGGCAGCGACAGGCGCCCCCGGGAGCGCTCTCTCTGGGGCGGAGGCCCGACGCAGAGACTTTACCCGGAGACAGTGAACCTCA TCTTGGCTAAAGGCAACCCTCACTTTGTCTGCGATTCTCGTGTCCTCGTCAAGCCTTACAAGGAGAAAGGCAAAATCCTCGAGAAGAAGCAGATGGAAAG AGGAGGAGAGTTTTCACCGTCAGCTTGTTCTAGCCCAACTGGCCTTGATTCCAGAGACCCATTTGATCTTCAACTTGGGAGTAGGATGTTCTACAACACA CAAGAGATGCTACTGAGGAAGAAGCTAGGGGAGCAAGCTGATCTGCAGCAAGCCATTGAACTCCATGGGAGAAGGCTAATGAGTCTACAGCTACTTGACC TGAAGAACCATCATCGTCAGCAGCTTATCCATGGTCTCTCTAATGGGTCTCCTCTTTCATCTCCAAGAACTCCGGTCCTTCCTGTCCCTGAAGAGAATGG TTTTGGAGCTGTAGTTGGTCATGACCAAGAGAAATACTTCACTGAACTCAATGATCTCCATGAAAGTTTCGAACATATCCTGCCTGAAAATCTCTTCAAC TCGCCCAAGAAAGCTAGTCTTGATCATCACAAGACTGCCTTCCCAGCTTCTCTTGAGCTTCATGATACTAACAGTACGAATTCTGCAATCAATATGACTC CATTGAAGTCTTTTCCCCAAATGACCAGGCTTTCATCTGGGCATGGAACCATTGGCATGAAGAGCTCATAA
AA sequence Show only first row Show all	>Lus10014914 pacid=23152798 polypeptide=Lus10014914 locus=Lus10014914.g ID=Lus10014914.BGIv1.0 annot-version=v1.0 MDSYEATKTVFSRIQAMDPDNASKIMGYLLLQDQGDNEMIRLAFGPESLLHNLILQAKSHLGLPISPTNSSSSSSSSNSNPSTPSSPFLSSPRPRISSSS LSYAGNQSGHSQNGNGVGSFPYGDLGDGDHQYSFLNESGKHADQLFDKIPDSALFSPTGDATSHFHRRSYSVPGVNFAADGWKPCLYYAKGFCKNGATCK FLHHGGGSDRRPRERSLWGGGPTQRLYPETVNLILAKGNPHFVCDSRVLVKPYKEKGKILEKKQMERGGEFSPSACSSPTGLDSRDPFDLQLGSRMFYNT QEMLLRKKLGEQADLQQAIELHGRRLMSLQLLDLKNHHRQQLIHGLSNGSPLSSPRTPVLPVPEENGFGAVVGHDQEKYFTELNDLHESFEHILPENLFN SPKKASLDHHKTAFPASLELHDTNSTNSAINMTPLKSFPQMTRLSSGHGTIGMKSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12440	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10014914 [exp]	0	1
AT4G30400			RING/U-box superfamily protein...		Lus10019973 [exp]	3.5	0.8614
AT4G32000			Protein kinase superfamily pro...		Lus10041026 [exp]	5.7	0.8658
AT1G24160			unknown protein		Lus10002952 [exp]	7.2	0.8403
AT4G23820			Pectin lyase-like superfamily ...		Lus10003890 [exp]	8.9	0.8733
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10030383 [exp]	16.0	0.8581
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10015386 [exp]	21.0	0.8487
AT1G24160			unknown protein		Lus10003514 [exp]	25.1	0.8357
AT5G14020			Endosomal targeting BRO1-like ...		Lus10012563 [exp]	27.3	0.8484
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	28.1	0.8503
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	33.3	0.8483

Compare expression of checked genes

Lus10014914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.