Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24820 619 / 0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) AT3G61140 84 / 1e-17 EMB78, CSN1, COP11, ATFUS6, FUS6, ATSK31 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027348 [exp] 684 / 0 AT4G24820 698 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) Lus10014789 [exp] 669 / 0 AT4G24820 691 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) Lus10017932 [exp] 639 / 0 AT4G24820 660 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G090900 [exp] 650 / 0 AT4G24820 671 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) Potri.012G093500 [exp] 647 / 0 AT4G24820 680 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF10602 [flax] [poplar] RPN7 26S proteasome subunit RPN7 CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10014916 pacid=23152799 polypeptide=Lus10014916 locus=Lus10014916.g ID=Lus10014916.BGIv1.0 annot-version=v1.0 ATGGATTTCCCAGAGGGAGCTCAACAACCGCATCTGGTTCTTGCCAACAAGCTCTTCCTCCTGACCCACCCAGATGTCCAGGACATCGAGAAGGTCCGCC TCAAGGAGGAGGTTTTGGATACCATCAAAACCCATGATGCAGAAGAAAACTTGGGAGAAAGTGAAGTTAGAGAAGCTCATCTTGCAAAATCCTTGTTCTA CATTCGTATTGGTGACAAGGAGAAAGCATTGGAACAACTTAAAGTGACGGAAAGCAAAACGGTTGCAGTTGGACAAAAGATGGACTTGGTATTCTACACC TTGCAACTCGGTTTCTTCTACATGGATTTCGATCTCATCTCCAAGAGCATTGACAAGGCAAAGAACTTGTTCGAAGAGGGAGGTGACTGGGAGAGGAAAA ACCGTCTCAAAGTGTATGAAGGCCTGTACTGCATGTCTACTCGCAATTTCAAGAAGGCTGCAGATTTGTTTCTAGATTCTATCTCGACCTTCACCACATA TGAGATATTCCCCTACGACACTTTCATATTCTACACCGTTCTGACAAGCATCATATCCTTGGATAGAGTGTCTCTTAAGCAGAAGGTGGTGGATGCGCCT GAAATCCTGGCTGTTATAGGAAAGATCCCACATCTCTCGGAGTTTCTTAACTCGCTCTACGATTGCCAGTACAAGTCTTTCTTCTCTGCTTTTGCTGGCT TGACCGAGCAAGTAAAGCTAGACCGGTACTTGCACCCGCATTTCCGGTACTACATGAGGGAGGTGAGAACGGTGGTATACTCCCAGTTCCTGGAGTCCTA CAAGAGCGTAACAATCGAGGCAATGGCGAAGGCATTCGGCGTGACAGTGGATTTCATCGATTTGGAGTTGTCAAGGTTCATTGCAGCGGGGAAACTACAC TGCAAGATCGACAAAGTAGCTGGGGTTCTTGAAACGAACCGTCCTGATGCGAAGAATGCTCTTTACCAGGCAACGATCAAGCAAGGGGACTTCTTGCTGA ACAGGATTCAGAAGCTGTCCCGGGTGATCGACTTGTAG
AA sequence Show only first row Show all	>Lus10014916 pacid=23152799 polypeptide=Lus10014916 locus=Lus10014916.g ID=Lus10014916.BGIv1.0 annot-version=v1.0 MDFPEGAQQPHLVLANKLFLLTHPDVQDIEKVRLKEEVLDTIKTHDAEENLGESEVREAHLAKSLFYIRIGDKEKALEQLKVTESKTVAVGQKMDLVFYT LQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLDSISTFTTYEIFPYDTFIFYTVLTSIISLDRVSLKQKVVDAP EILAVIGKIPHLSEFLNSLYDCQYKSFFSAFAGLTEQVKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFIAAGKLH CKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24820			26S proteasome, regulatory sub...		Lus10014916 [exp]	0	1
AT3G22110		PAC1	20S proteasome alpha subunit C...		Lus10004235 [exp]	1.0	0.9453
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10032420 [exp]	2.0	0.9396
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10037416 [exp]	2.8	0.9212
AT1G56450		PBG1	20S proteasome beta subunit G1...		Lus10036124 [exp]	4.2	0.9169
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10005410 [exp]	6.3	0.9112
AT5G05670			signal recognition particle bi...		Lus10029130 [exp]	8.5	0.8892
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10040479 [exp]	8.8	0.9056
AT3G49100			Signal recognition particle, S...		Lus10018775 [exp]	9.2	0.9030
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10012997 [exp]	10.6	0.9139
AT1G04850			ubiquitin-associated (UBA)/TS-...		Lus10037827 [exp]	11.2	0.9148

Compare expression of checked genes

Lus10014916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.