Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31540 238 / 1e-68 ATEXO70G1 exocyst subunit exo70 family protein G1 (.1) AT1G51640 165 / 6e-43 ATEXO70G2 exocyst subunit exo70 family protein G2 (.1) AT5G03540 154 / 4e-40 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52340 154 / 2e-39 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G50380 144 / 5e-36 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT5G52350 129 / 4e-31 ATEXO70A3 exocyst subunit exo70 family protein A3 (.1) AT1G72470 125 / 6e-30 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 125 / 1e-29 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 123 / 3e-29 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT1G07725 115 / 1e-26 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027347 [exp] 1249 / 0 AT4G31540 239 / 3e-69 exocyst subunit exo70 family protein G1 (.1) Lus10007751 [exp] 1027 / 0 AT4G31540 239 / 8e-69 exocyst subunit exo70 family protein G1 (.1) Lus10018672 [exp] 976 / 0 AT4G31540 231 / 3e-66 exocyst subunit exo70 family protein G1 (.1) Lus10026230 [exp] 241 / 6e-70 AT4G31540 1045 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10042439 [exp] 239 / 4e-69 AT4G31540 1034 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10021283 [exp] 157 / 3e-40 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10037329 [exp] 149 / 1e-37 AT4G31540 627 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10043432 [exp] 147 / 5e-37 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10034151 [exp] 135 / 1e-32 AT5G03540 991 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G015500 [exp] 878 / 0 AT4G31540 250 / 4e-73 exocyst subunit exo70 family protein G1 (.1) Potri.006G272900 [exp] 229 / 2e-65 AT4G31540 1010 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.018G008400 [exp] 228 / 3e-65 AT4G31540 971 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.010G250500 [exp] 193 / 1e-52 AT4G31540 731 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.008G008700 [exp] 179 / 6e-48 AT4G31540 716 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.016G071000 [exp] 161 / 1e-41 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.008G017800 [exp] 153 / 4e-39 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.006G203900 [exp] 152 / 1e-38 AT5G52340 988 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.010G241800 [exp] 149 / 1e-37 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.001G166400 [exp] 138 / 5e-34 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10014917 pacid=23152723 polypeptide=Lus10014917 locus=Lus10014917.g ID=Lus10014917.BGIv1.0 annot-version=v1.0 ATGACGACGGCCGTAGATCATTTCTCCATCGCCGCCAACCTAGAGTCCACATGTTCCGATCTCCGGAGCCTCCTCCAGACGTCGTCCAAGATGGAGTCCA CCCTCCGCAAAATGGAGAACCGGTTCGAAACCATGGACGAGAACCTTGAAACAACCGCCAGGAGAATCGCCCCTCTCCAATCCCTAGCCATGGCCGCCAA AGCTCTCGACACGAGGATCAATCGAGCCGTCTCCCCTGCTTTCTCCGTCCTCGACTGGTTCGTCCGCTGCGAGTTCCTCCAGCGAAAGCTGACTCATCTC TCGCAGCCGCCGAAGAACAATCATCATCGGCGGCAGCGGCTGAGGCGGCTGCTAGACTACGTCGAGTGCGTAGACGAGCTGAATTCGACGATCGACGCGA TTAGTCAGGACGGGGAGCCGGTGATCCAGAAGCTGCAGGAAGTGGTGGAATTTCTGAGGAGGACGAAGGCGACCGATCATTTCAGATCGCATCGGTTGAG GGAAACCCTAATCGCTCTGAAATCGCTCTACGAGACGGAAGTGGATGGAATGAGATTCGAAGGAGTTCTCGATCAGGCGCTGCTTAATTTGCAGGATGAG TTCGAATCGATTCTTCAGCAGCTTACGCATCAGGATTTAGGGGATCAATTCGGTCAGGATCTCGGTACGGATCTGGAGATTCAAATCCTGAAGCGGATAT CCGAAATCCTCTGTTCTAACGACTGTTTGGATATATGCATCGACATCTTCGTGAAAGTTCGGTACAAGAGATCGGCAAAGGCGTTGATGAAGCTGAATCC AGATTACCTGAGAACATATACTCCAGAAGAGATGGACGAGATCGAGTGGGAGAAATTGGAGACGGCGATAAGCTTATGGATTCAGCATTTCGAGGTAGCT TTGAAGACGGTCTTTATGCCGGAGAAGAATCTCTGCCGTCGGATTCTGGGAGGGATCCAGCTGGACGGCGTCGGAGCGATTTGGATGGAGTGTTTTGTGA AAGTCGCCGATAAAATCATGGCGGTTTTCTTCCGATTCGGGGAAGGTGTAGCGAGGAGCACTAAAGAGCCGCAGAAGCTGTTCAAGCTTTTGGATATGTT CGATTCGTTGGAGAAGATCGGCGGCGAGTTCACGGCGATTTTTGAAGGGGAAGCTGGATTGGATATCTGTACAAGATACAGAGAGCTGGAGAAGCTTCTC GTTCATTCGTCGAGTAAAGTGTTCTGGGAATTCGGACTCCAGATCGAAGGACACTCCGACGGGTTCCCTCCGCCCCAGGATGGATCCGTTTCGAAACTCG TGAGGTACGCCATTAACTACCTCAAATACCTAGCGACTGATGCTTACAGCGTTCCGATGGCCAAAGTTCTCCGGACGGAGCAAATGTGGAAAGCCGGAGT TCTGTCGAGACCCGACTCCGACGAAACTCTGCTCAAGGAAGCCATCACCAACATCGTCGAAGCTCTGCAGCGAAATGTCGAGTCTAAGAGGTCTCGGTAC AAGGACAAAGTGCTACCGCACGTATTCGCCATGAATACGTACTGGTACATCTACATGAGGACACGGAACACCGAGCTAGGGAAGCTGCTAGGGGAGCAGT ACATGAAGCAGAGGTACAAATTTGTGGCGGAGGAATCAGCGTATCTTTACCAAAAACAGGCGTGGGGCCCGCTGGTGAGGCTGCTTGAGTCAGCGGCGGC GAAGGAGGAGGAGGAGGATGGTTCCGTTTCCGTGGTGGAAGGGTTTTTGAAAGCGTTGGAGGAGGTGGCAGAGAGGCACAGGGCGTTATACACAATCCCC GACGTCGTTTTGAGGGAGCAGATCCGAGAGGCGACAGTGAAGGTTGTCGTTCCGGCGTACTATGATTTTGTGACCGGGAAGGGGAGCAAGTTTCCAAGTC CGGAGTCAGTTAAGGCGATGGTGTGTCGGGTTTTCGACAATGGCGAGCAGTACCCGGTGACTCTAGGAGAAAGGAAGTTGCGACGACGGGATTCGAAAGA CCGATCGCCAGCGGGTAGTTCTGTTGGGTCAGTTGATTATCAGAGTAGACGGTCTGGATCCATTGGATCGTCACCTAGTGACCGGTTAGACGGTTGA
AA sequence Show only first row Show all	>Lus10014917 pacid=23152723 polypeptide=Lus10014917 locus=Lus10014917.g ID=Lus10014917.BGIv1.0 annot-version=v1.0 MTTAVDHFSIAANLESTCSDLRSLLQTSSKMESTLRKMENRFETMDENLETTARRIAPLQSLAMAAKALDTRINRAVSPAFSVLDWFVRCEFLQRKLTHL SQPPKNNHHRRQRLRRLLDYVECVDELNSTIDAISQDGEPVIQKLQEVVEFLRRTKATDHFRSHRLRETLIALKSLYETEVDGMRFEGVLDQALLNLQDE FESILQQLTHQDLGDQFGQDLGTDLEIQILKRISEILCSNDCLDICIDIFVKVRYKRSAKALMKLNPDYLRTYTPEEMDEIEWEKLETAISLWIQHFEVA LKTVFMPEKNLCRRILGGIQLDGVGAIWMECFVKVADKIMAVFFRFGEGVARSTKEPQKLFKLLDMFDSLEKIGGEFTAIFEGEAGLDICTRYRELEKLL VHSSSKVFWEFGLQIEGHSDGFPPPQDGSVSKLVRYAINYLKYLATDAYSVPMAKVLRTEQMWKAGVLSRPDSDETLLKEAITNIVEALQRNVESKRSRY KDKVLPHVFAMNTYWYIYMRTRNTELGKLLGEQYMKQRYKFVAEESAYLYQKQAWGPLVRLLESAAAKEEEEDGSVSVVEGFLKALEEVAERHRALYTIP DVVLREQIREATVKVVVPAYYDFVTGKGSKFPSPESVKAMVCRVFDNGEQYPVTLGERKLRRRDSKDRSPAGSSVGSVDYQSRRSGSIGSSPSDRLDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10014917 [exp]	0	1
AT5G45030			Trypsin family protein (.1.2)		Lus10017140 [exp]	1.0	0.7965
AT4G11900			S-locus lectin protein kinase ...		Lus10041639 [exp]	3.3	0.7531
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10016312 [exp]	8.5	0.7883
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10007568 [exp]	11.1	0.7149
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10039937 [exp]	12.6	0.7953
					Lus10000811 [exp]	14.3	0.7649
AT4G37710			VQ motif-containing protein (....		Lus10019270 [exp]	15.3	0.7453
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10016173 [exp]	21.9	0.7762
					Lus10008536 [exp]	23.9	0.7198
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	26.2	0.7547

Compare expression of checked genes

Lus10014917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.