Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12400 947 / 0 DNA binding;zinc ion binding;DNA binding (.1) AT5G22760 422 / 5e-122 PHD finger family protein (.1) AT5G35210 412 / 1e-118 metalloendopeptidases;zinc ion binding;DNA binding (.1.2) AT1G05380 61 / 1e-08 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT5G44800 60 / 2e-08 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT4G14920 59 / 2e-08 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36740 59 / 3e-08 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 59 / 3e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G14980 57 / 1e-07 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G63900 57 / 1e-07 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027346 [exp] 3115 / 0 AT5G12400 1029 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Lus10020532 [exp] 240 / 2e-63 AT5G22760 731 / 0.0 PHD finger family protein (.1) Lus10009383 [exp] 239 / 4e-63 AT5G22760 714 / 0.0 PHD finger family protein (.1) Lus10006110 [exp] 64 / 1e-09 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 64 / 1e-09 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10007741 [exp] 61 / 9e-09 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10018681 [exp] 60 / 2e-08 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10025386 [exp] 57 / 1e-07 AT5G58610 271 / 4e-77 PHD finger transcription factor, putative (.1) Lus10036223 [exp] 57 / 2e-07 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G254300 [exp] 1258 / 0 AT5G12400 1020 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Potri.009G049100 [exp] 1249 / 0 AT5G12400 1084 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Potri.004G189600 [exp] 246 / 2e-65 AT5G22760 879 / 0.0 PHD finger family protein (.1) Potri.009G150200 [exp] 231 / 1e-60 AT5G22760 855 / 0.0 PHD finger family protein (.1) Potri.010G087700 [exp] 62 / 3e-09 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 61 / 8e-09 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G392801 [exp] 60 / 2e-08 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.003G110100 [exp] 60 / 2e-08 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.001G123400 [exp] 59 / 3e-08 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.004G217600 [exp] 57 / 1e-07 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF02791 [flax] [poplar] DDT DDT domain
Representative CDS sequence Show only first row Show all	>Lus10014918 pacid=23152844 polypeptide=Lus10014918 locus=Lus10014918.g ID=Lus10014918.BGIv1.0 annot-version=v1.0 ATGGAGTTCATCGGGAAGCAATTGAGGAAGGACTCGGGAGGTGGCGGTTCGTTGTCGTTCACGGCGGGAATCGTAAAATCCTACGACGCTTCCTCTGGTT CCTTCGAGATCGTCTACGAGGACGGCGATTCCGAGGAGCTGGATTTCGCAGCGGTGGCAGCGGCGGTGGTGGAGGACCGGGAATTGGGAGCTGGTGAAGT GGTGGGGGACCACTGTCCACGGCTGGGGCGGAAGCCGAAGAAGCGCCGCCGGGTTGACCGGGATCGACTGGGAGACGGCGGCGGCGAGGAAGCCGGGTCA ATTGGAGGTAATGGTGTTCTGTTAGATATGAATAGTGTTAATGTTGATTTGCGAGACGGAGAGGATGATGCGGTTTTGGGAGGGAGTAGTGAGGTTGCTG AAAATTGTGGTAGAGTTGGAGTTGATTTGAATGAAATCGTAGGTAAGGAATGCGATGTAGATGAGAATTCTAGGGACATTGGGGCTGAAAATGGGGTTAT GTTGCATGCAAATCCTGGTGAAAAACAGGAGCTTGATCTGAATGCTGCTTTTAGCTTGAATTTGAATGAAATGGCTTTTGACTTGAATGAGGATGACCAT GGGAGGCCGGATACTTCTCGAGGTTTGAAGGATAGAGGTTGCATTGACTTGAACTTAGATGCTAACGCGGAGTTGGATGAGCATGCTAAGGAACTGGATT CTGGTGGAGGTGATGCTCTGGAGACCCTGAAAAAAGAGTGTGGCTTTGATTTGAATATGGGGTTGGATGAGGAAATTAAGGATGAACAAGATGGTTATAT TGCAGGACAAGTTAAGGGTGATTTGGGTTTTGAGGCAGGAAAAGAGGATGCTCAGAATACCTTGGAGGGTGGCAGAGTGGTTGAGGAAAATGAGAATGGG GTTGCTCTTTCCAATGGTGTGGTTGAGAATCATCATGGCTCTAATGATAATTCATGTCATGCATCAGCTGCAAGTGTGTGGAAAGTGGACAATGTTTCTG CCGACGATTTCGGAAACTGCAATTCTGTTATGGGAAGGGATGCTCCGGATGTTAACGTGGATTCTAATGCTAGTATTGGCGGGAACCAAGTTGGAACTAG AAGAAGTGGGAGGAGGAGAAAGGTTGCTGGCAACCCAAATCCTACTGTAGAAGAAACAGTGTCAGCCAACCGTACTGGTATTAAGGAAGATGTGGGTGTG GTAATTGACGGGAACCGGCAAAATGTAGGCAGTGCATGTAAAGATTTGAGCGCAAGCCGTAGAAAGAGACGGAAGTTTTCAGATGACCCTGTCCAAGAAA CTGTGGTGTTAAGAAGGAGTGCACGTAGGGGATCAGCTAAAAAACATGATGTAACCACTAAAGCACCTAATGAGGTCTTTAAGTCAGTGTCCCCTGAAGT TAGTGCATTAAGTGACGAGAAACCAAGGAAATTGTATTATGAGCCAGAAGAAGAGCTCGTTGTTCTTCCTCCAAAGGTGGAGCTACCACCTTCCTCGCAA AATTTGGATTTGGGTGGAATCCCCACACTCGATCTGTTCTCAATTTATTCATGTTTAAGATCATTTAGTAATTTGCTTTTCTTAAGTCCCTTCAAGTTGG AAGATTTTGTGGAGGCCCTGAAGAGCAACCTGCCAAGTGTGTTGTTTGATTGCATTCATGTTTCCATTTTGCAAATACTCAGACAGCATTTGGAATACCT TTCAGTTGAAGGCTCTGAATCTGCTTCGGATTGCCTTAGGAGCCTTAACTGGGATTTTTTAGATTTGGTTACATGGCCCTTGTTTATGGTTGAGTACTTT CTAGTACACTGTTCAAGCGAGAAACATGGATTAGATCCCAGTTGCTTGAAGCTATTCAAAAGTGATTACTATCAACAACCTGTGTCGGTGAAGGTTGGCA TGCTCAGGTGTCTATGTGATGATATGATTGAGGCAGAGGCCATTCGGGCTGAGCTAAACAGGAGGTCTTCAGGTGCAGAACTTGAGTTGGATTTTGATCG GAGTGTCAACCTTGGATCTTCCAGGAAAAGGAAGGCTATTGTAGATTTAGGACGTGGTTCTGGCTTGGTTGAGGATGCTATTGACGACACAATGGATTTG AACGTTGATGAATGTTGCCTTTGTAAGATGGATGGAAACTTGATTTGTTGCGATGGTTGCCCTGCAGCATATCATTCTAAGTGTGTAGGAGTTGCTAACG ATTCTTTGCCGGAGGGAGATTGGTACTGTCCTGAGTGTGTAGTAGATAAACCATCAGTGAGACATCGGAAGACACTACGTGGAGCAGAAGTACTGGGAGT GGATCCTCACGGCCGAATATATTTTGGCAGCTGTGGCTACCTTTTAGTGTCAGATTCAAGTGACTCTGACTCCTTTAGTTATTATCACAGAGATGATCTA CATGCTTTAATTGATGCGCTAAGATCTTCATATAGGTTTTATCATAACATTGTAGAGGCAATCTCTAAGCACTTGGACGTCCCTGTTAGGAATTTGAATA CTGTACATCACTTAGGCAAGTTATTGCCTTCACCTTCTTTGGCATCCACGGTTAAGGAGAATGTTAATGAAAGGAAATCCGAAGGTACATCATCTTCTGG TCTGATTGATGCATCAAAGTCTTTGAGCTCTACGCATATAAGCTCTGAAGGATCAGCTGAAACCACTCAAATTGGTCCAATTAGTCAGAATTTTCAGAAA GAAGGGCTTGACGGTTCTAATCAATCAGCTGACAACTGTAATGATCCTGATATGAAAAACTCGGCGGAACCAAAACCGGGAAGTGACCTACATTCTTCTG CTGTGGACACAATACCATTAAAGAGATACATGAATCACTACAGTTTTGGTCAATCTGCCTCTCGAGTTGCAGAAGACTTGATGACCAAGTCATCAAATAA AATAATGGACACGTCAGCAAAGTCAGACGAGGAAATGATTTCTGCTCAGATGAAGATTATTCTGAAAAACACCTTAAAGTTACGTTGGCCAAGTATCCAG AGTAGTAACTTAATGGTGCAGAGGGAGAAATGTGGATGGTGCTTCATGTGCCGTGCACCAATGGATGATTTGGATTGTTTGTTTAATATGAGTTTTGGCC CTGTCAAGGAAATGCCAGTAAGAGAAGTGCATGAGCTTCAGCTGGAAAAGAACAGAAATGGACATCTCACTTATGTAATAGGCCAAATCATCCAAATCGA AGAGCGGTTACAGGGGCTTCTACTTGGTCCATGGGTGAAACCAGATTATAGCAGGCTATGGCGTGAAAACATACGCAAGGCCACAGATATTTCATCTGTC AAATGCTTACTCCTAAAGTTAGAATCAAATGTCCATCACCGTGCAATTTCCACCGAATGGTTAAAACACATCGATTCTTCTGCAGTGGTCGGTTCAGCCT CTCACATTGTGGTAAATTCTAAAGCCACAGCTTCAAAATCCGCTGTAGGCAGGAAGCGCAGCAAATCTGCAGAATCCGAGCCTGGCCCTTCAAATGCTAC TGGTGGATTGAGAATGTTATGGTGGAGGGGTGGTAAACTTTCCCGTAAATTATTCAGTTGGAAGGTTTTACCTCTCAACTTGGCTTCCAAGGCTGCTAGG CAAGCTGGTCATACGAGAATACCAGGTATACTATATCCCGAAAATTCAGATTTCGCAAAGAGAACCAAATCTGTTGCTTGGCGAGCTGCTGTTGAGTCAT CAACGACTCCTGAACTTCTTGCTTTGCAGGTTAGAGAGCTTGATTCCAATATCAAGTGGGACGAAATGGAGAACTGGCATGCATTGTCCGCACTAGACAA GGAGTACAAAAAGTCACTCAGGCTGTTCAAGAAAGTGATTGTACGCAGGAAATGCTCCGAGGGAGAAGGAACAAAGTATCTTCTCGATTTCGGAACGAGG AAAAGCATTCCTGAAGTGGTCACGAAAAACGGGTCGGTCATCGAAGAATCTTCCAACGAAAAGAAGAGATATTGGGTGAGTCCGATTCACGTCCCTTTGC ATATGCTTAAAAATTTCGAAGAGAAAAGAGCTGCACGCAAGTCTAGCAAGATCGTCAGCTTGGGGAAACCCTCCAAGGAGAAAAACTCGTTCGCAAAATC GTCCTTGGAGAAAAAGGGGTTCGCTTATCTCTTCGGAAGGTCTGAAAGATCGGATCTTTATCAGTGCGGTCACTGCAAGAAAGATGTTCCTAGCAGCGAG GCCGTATGCTGTCAATCTTGCCAGGAATTCTTCCATAAGAGGCATGCCAGAAAGTCTGGTAGTTCAAATCATGCGAAATGTGTATACACATGCCACCATT GTTTCAGCGGCAACCATATAAAGCTTGGAAAGAAGAAGGCCGGGAAGGGAAGCTCGAAAAGCACTAACAAGGCACAGCTGTCTAAGTCTAAGAAGATAGC TATTGTTCGTAGGTCGGTTCGTCTTAAAAGGGGCAGTAGAAAGGGGTTAAGGGGTCGGCCGCCTCGCGTAAAGGATGATCAGAAGGTGACTCCTCCTGGA AGAAAGGGCTTAAGGGGTCGGCCACCGCTCGTCAAGGACGATCAGAAGGCTGGAAAGCGCCCGAGGGGTAGGCCACCTCTCGTAAAGGATGGGCTAACTA CTCCTCTTAAGCGCCCAAGGGGTCGACCACTGAAGGATACGGGAAATCAAACTATTACTCCTCCTCGAAAGAGCTTACGGGGTCGGCCACCCCTCATGAA GAAGGACGATGATCGAAAGACTCCTCCTGTGGTGATTACGTACTTGCGCCGTTCAGCTAGACAGACTACTACGCCACAGGCTACATCGCCTGAAGCACCT ACGGCCCAGAGCGAAAATAGGGAACAACTGAAACTGGGAAAAGAGTTTCCTTTATCACAGAAGAAGAGAAGCTCGACCAGCCATAGTTACTGGCTTCATG GTCTTCGAGTGTCTGCAACACCAGAGGATGAACGAGTTGTGCAATTTCGGAAGACTAGGCTTGTTACTGCTTCGAGGAACGACATCGTTGATCAACAACT GAAATGCAGTCTGTGCCGTGAAGCAGAACACACATCAACATTGAATTATATTTCGTGTGAGCTCTGTGAAGTATGGTTTCATGGAGATGCATTCGGGCTC AATTCTGGCAACATCGATAGCGTTATTGGATTCCGTTGCCACTTGTGTCGAGAAAGGAGCCCTCCTTCATGTCCTCTCCTCGATACCTTGAAAAGTGACG AACCTCAAGTAGTTCCTGAAGATATCGTCGCTGGATCTGAAAATTTGGAGGATGCAGATCTCGGTGGTGGTCATGATGCTCATCCTATGGAAACAGATGA TCATCAGGATTCAAATGCTGCCATTGACGACAGTTGA
AA sequence Show only first row Show all	>Lus10014918 pacid=23152844 polypeptide=Lus10014918 locus=Lus10014918.g ID=Lus10014918.BGIv1.0 annot-version=v1.0 MEFIGKQLRKDSGGGGSLSFTAGIVKSYDASSGSFEIVYEDGDSEELDFAAVAAAVVEDRELGAGEVVGDHCPRLGRKPKKRRRVDRDRLGDGGGEEAGS IGGNGVLLDMNSVNVDLRDGEDDAVLGGSSEVAENCGRVGVDLNEIVGKECDVDENSRDIGAENGVMLHANPGEKQELDLNAAFSLNLNEMAFDLNEDDH GRPDTSRGLKDRGCIDLNLDANAELDEHAKELDSGGGDALETLKKECGFDLNMGLDEEIKDEQDGYIAGQVKGDLGFEAGKEDAQNTLEGGRVVEENENG VALSNGVVENHHGSNDNSCHASAASVWKVDNVSADDFGNCNSVMGRDAPDVNVDSNASIGGNQVGTRRSGRRRKVAGNPNPTVEETVSANRTGIKEDVGV VIDGNRQNVGSACKDLSASRRKRRKFSDDPVQETVVLRRSARRGSAKKHDVTTKAPNEVFKSVSPEVSALSDEKPRKLYYEPEEELVVLPPKVELPPSSQ NLDLGGIPTLDLFSIYSCLRSFSNLLFLSPFKLEDFVEALKSNLPSVLFDCIHVSILQILRQHLEYLSVEGSESASDCLRSLNWDFLDLVTWPLFMVEYF LVHCSSEKHGLDPSCLKLFKSDYYQQPVSVKVGMLRCLCDDMIEAEAIRAELNRRSSGAELELDFDRSVNLGSSRKRKAIVDLGRGSGLVEDAIDDTMDL NVDECCLCKMDGNLICCDGCPAAYHSKCVGVANDSLPEGDWYCPECVVDKPSVRHRKTLRGAEVLGVDPHGRIYFGSCGYLLVSDSSDSDSFSYYHRDDL HALIDALRSSYRFYHNIVEAISKHLDVPVRNLNTVHHLGKLLPSPSLASTVKENVNERKSEGTSSSGLIDASKSLSSTHISSEGSAETTQIGPISQNFQK EGLDGSNQSADNCNDPDMKNSAEPKPGSDLHSSAVDTIPLKRYMNHYSFGQSASRVAEDLMTKSSNKIMDTSAKSDEEMISAQMKIILKNTLKLRWPSIQ SSNLMVQREKCGWCFMCRAPMDDLDCLFNMSFGPVKEMPVREVHELQLEKNRNGHLTYVIGQIIQIEERLQGLLLGPWVKPDYSRLWRENIRKATDISSV KCLLLKLESNVHHRAISTEWLKHIDSSAVVGSASHIVVNSKATASKSAVGRKRSKSAESEPGPSNATGGLRMLWWRGGKLSRKLFSWKVLPLNLASKAAR QAGHTRIPGILYPENSDFAKRTKSVAWRAAVESSTTPELLALQVRELDSNIKWDEMENWHALSALDKEYKKSLRLFKKVIVRRKCSEGEGTKYLLDFGTR KSIPEVVTKNGSVIEESSNEKKRYWVSPIHVPLHMLKNFEEKRAARKSSKIVSLGKPSKEKNSFAKSSLEKKGFAYLFGRSERSDLYQCGHCKKDVPSSE AVCCQSCQEFFHKRHARKSGSSNHAKCVYTCHHCFSGNHIKLGKKKAGKGSSKSTNKAQLSKSKKIAIVRRSVRLKRGSRKGLRGRPPRVKDDQKVTPPG RKGLRGRPPLVKDDQKAGKRPRGRPPLVKDGLTTPLKRPRGRPLKDTGNQTITPPRKSLRGRPPLMKKDDDRKTPPVVITYLRRSARQTTTPQATSPEAP TAQSENREQLKLGKEFPLSQKKRSSTSHSYWLHGLRVSATPEDERVVQFRKTRLVTASRNDIVDQQLKCSLCREAEHTSTLNYISCELCEVWFHGDAFGL NSGNIDSVIGFRCHLCRERSPPSCPLLDTLKSDEPQVVPEDIVAGSENLEDADLGGGHDAHPMETDDHQDSNAAIDDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12400			DNA binding;zinc ion binding;D...		Lus10014918 [exp]	0	1
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	2.4	0.8423
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017748 [exp]	4.9	0.8361
AT4G03000			RING/U-box superfamily protein...		Lus10021954 [exp]	5.5	0.7607
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	6.3	0.8381
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Lus10029876 [exp]	7.1	0.7951
AT5G58410			HEAT/U-box domain-containing p...		Lus10042236 [exp]	8.4	0.8207
AT4G02480			AAA-type ATPase family protein...		Lus10036347 [exp]	8.5	0.8233
AT1G04140			Transducin family protein / WD...		Lus10000495 [exp]	9.2	0.8172
AT3G19780			unknown protein		Lus10013425 [exp]	12.0	0.7494
AT3G19780			unknown protein		Lus10040970 [exp]	12.4	0.7890

Compare expression of checked genes

Lus10014918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.