Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53450 541 / 0 ORG1 OBP3-responsive gene 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038813 [exp] 967 / 0 AT5G53450 817 / 0.0 OBP3-responsive gene 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G017100 [exp] 696 / 0 AT5G53450 890 / 0.0 OBP3-responsive gene 1 (.1.2) Potri.015G016801 [exp] 583 / 0 AT5G53450 758 / 0.0 OBP3-responsive gene 1 (.1.2) Potri.015G016500 [exp] 285 / 3e-91 AT5G53450 288 / 2e-93 OBP3-responsive gene 1 (.1.2) Potri.015G016300 [exp] 149 / 1e-42 AT5G53450 180 / 5e-55 OBP3-responsive gene 1 (.1.2) Potri.015G016375 [exp] 59 / 4e-10 AT5G53450 168 / 6e-50 OBP3-responsive gene 1 (.1.2) Potri.015G016600 [exp] 0 / 1 AT5G53450 224 / 5e-71 OBP3-responsive gene 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014920 pacid=23152728 polypeptide=Lus10014920 locus=Lus10014920.g ID=Lus10014920.BGIv1.0 annot-version=v1.0 ATGGCGGCACTCCGATCACCTTCTCTCACCGGAAGGCGATTCGAACCCTCCACCAACTCCTCACCGCCGACTTCGACGACGAGATTGTTCGGCAGGCACA GTCAATTACGCTACGGAAACAGGTCGATCGGAGGGAGGAGAATAAGCACCGCGAGGTGCTTCTCTTCAGCTACTTCGAGCGGAGGAGCTGTTTCGCCGAT GGTGGAGGAGGAAGAAGAAGACGAGTCAGGGGATGTGATTAGATTTGAGATGTCCGATTTCAAGATGCTTGATCGCGTTAGTGTCGGCCTGGGAGGACGG GCGGATGAAGTGGTTTCTGAAGCTGTCGTTAACGATGCATCGAGTCCTTTGTATAATACGAGAGTTGTTCTGAGAAGGCTAACAAGTGTTCAAGCTCAAC GAAGGGGAAAGCGAGCAATCGAGGTTTTTTTTGGCCGTTTCCAATGGCTTCTGTTAGTTTTATCAGTGATGAGTGATGGGTTTGCTTACTGTAAAGGAAT TTGGGTTGCAGGTGTTGAAGAAGCTAGTTCGTCGGAGGCTAATGTACCATTCATATTCAATGCAAGTTCATGGATACATTTCCCACGCAAGCTCTGGTTG TGCCTCATTCACATTGGTCCATGGGGTAGCTTGCTTTGCTCTAAAGTTAATTACTTGCACAGCCATGGACTTGCTCATACAGAGCTGAGGCTTGAGAATG TGCATATAAGCCCTGTGGATAGACATATCAAAGTGGGGATACTAGGTAATGCTGCTGACTTTTACAAGGATGGTCAGACCGCTACTACATTGGACAGCAA CCTGGATCGGCGACAAATGATGATTGCATTTGACATGAGATGCTTAGGATTCATGATGGCAAAGATGGTGCTTCGAGAACTCATGAATCCACCGGTGTTT TCAAAGTTCAAAGCCTTCCTGATGAAGTACATAATCAAATACCCGGTTCGCACATTGCTGCAGGGACATGATCCGTCCTGCCTCCGTGAGTTCTTGCTGC AGACTCTTAACAGGAGTTCTTCGTCTGGAAACATTGGTCTCCAAATACTCGACCGAAATTGGGGTGCAGGATGGAACCTTCTGTCCTTGTTACTCGCAAC GAGATCCTCTACACGAATAAGCTGTCTGGATGCTCTGAGGCATCCATTTCTGTGCGGACCGAGATGGCGCATTGCTCCATCCATGGATATCATTCGATGG GGTCTCGGCTCTACAGCAGTACGAATCGTCGAGGAATACATTTACAGTAGGCCACAGCGGAATAAGATTTCGTACTTTATCGAATTGATGGAGATGCTAA ACCTGAATTCAAAGCCAAAGAACTGGTTCGAATTGCTGCCAGGGAAATGGCGTCTCGTCTACTGCACAGGAAGACATCTAGGACTGACCCTCCGCCAGCC ACCCGCCCGGGTACTCATTGGCGACGTTCACCTAACCGTATCAAGGCCATCAAAGAAAAGCAAAGACCTTTCATTCAGCTCCACCATTCCCTTCAAGGTC ATGATCGGCCGCGACTGGCCCCATGACAAGACCGGCATCGATGGCCAGCTAAACGTGGACTCTCCATTCAGACTAACACCAGGGAAGAGACTCTATCTCA AGGGAGAGAAGACTACCGGCAGATTCTCCTACAGCGAATCCACCGACGTGGGTTCCTTGGCACCCAAGCTTTTCGAGGGGAAGTGGAAGGACGCTATCCC TTTCAAGGAGTTCCCCTCGAGCCTTCATGTCGCGAAGCTTGTAGCTTCTGCGGATGCTCTAGAAATCGCGATGAGCTTAGCCGATCAGAACGTGGCTCAG GCTCGAAATGTGCTCCAAGAGGTTCGCACCCAGTTGCCTCCCGATATGTTCGATTTGTCCAAGATTGTGTGCGGGACGTTTGTTGACTCGCGGCATTTGG TTCTTCGTGGTGTCAATGGGTCTGCTATGTTGTTTGCTAGGTCTTGTTTGGATCAGTAG
AA sequence Show only first row Show all	>Lus10014920 pacid=23152728 polypeptide=Lus10014920 locus=Lus10014920.g ID=Lus10014920.BGIv1.0 annot-version=v1.0 MAALRSPSLTGRRFEPSTNSSPPTSTTRLFGRHSQLRYGNRSIGGRRISTARCFSSATSSGGAVSPMVEEEEEDESGDVIRFEMSDFKMLDRVSVGLGGR ADEVVSEAVVNDASSPLYNTRVVLRRLTSVQAQRRGKRAIEVFFGRFQWLLLVLSVMSDGFAYCKGIWVAGVEEASSSEANVPFIFNASSWIHFPRKLWL CLIHIGPWGSLLCSKVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYKDGQTATTLDSNLDRRQMMIAFDMRCLGFMMAKMVLRELMNPPVF SKFKAFLMKYIIKYPVRTLLQGHDPSCLREFLLQTLNRSSSSGNIGLQILDRNWGAGWNLLSLLLATRSSTRISCLDALRHPFLCGPRWRIAPSMDIIRW GLGSTAVRIVEEYIYSRPQRNKISYFIELMEMLNLNSKPKNWFELLPGKWRLVYCTGRHLGLTLRQPPARVLIGDVHLTVSRPSKKSKDLSFSSTIPFKV MIGRDWPHDKTGIDGQLNVDSPFRLTPGKRLYLKGEKTTGRFSYSESTDVGSLAPKLFEGKWKDAIPFKEFPSSLHVAKLVASADALEIAMSLADQNVAQ ARNVLQEVRTQLPPDMFDLSKIVCGTFVDSRHLVLRGVNGSAMLFARSCLDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Lus10014920 [exp]	0	1
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Lus10038813 [exp]	1.0	0.9779
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10032950 [exp]	4.7	0.9626
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10042561 [exp]	5.5	0.9463
AT1G18910			zinc ion binding;zinc ion bind...		Lus10042190 [exp]	8.7	0.9357
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10036310 [exp]	8.8	0.9509
AT5G44390			FAD-binding Berberine family p...		Lus10038442 [exp]	9.6	0.9562
AT1G11050			Protein kinase superfamily pro...		Lus10028554 [exp]	10.8	0.9333
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10027611 [exp]	11.7	0.9180
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10015062 [exp]	12.7	0.9613
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Lus10013339 [exp]	15.2	0.9455

Compare expression of checked genes

Lus10014920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.