Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66920 328 / 1e-104 Protein kinase superfamily protein (.1.2) AT1G67000 329 / 3e-102 Protein kinase superfamily protein (.1) AT5G38260 320 / 3e-101 Protein kinase superfamily protein (.1) AT5G38280 321 / 5e-101 PR5K PR5-like receptor kinase (.1) AT1G66910 320 / 1e-100 Protein kinase superfamily protein (.1) AT4G18250 321 / 3e-99 receptor serine/threonine kinase, putative (.1) AT1G66930 316 / 3e-99 Protein kinase superfamily protein (.1) AT1G70250 313 / 7e-97 receptor serine/threonine kinase, putative (.1) AT1G66980 319 / 1e-96 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G39030 304 / 2e-93 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025553 [exp] 566 / 0 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10025547 [exp] 491 / 3e-168 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10026761 [exp] 443 / 4e-150 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10014924 [exp] 349 / 3e-112 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10025545 [exp] 308 / 2e-100 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10022359 [exp] 313 / 1e-98 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 313 / 3e-97 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025492 [exp] 308 / 5e-96 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10008362 [exp] 277 / 1e-85 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G018000 [exp] 676 / 0 AT1G66920 355 / 2e-114 Protein kinase superfamily protein (.1.2) Potri.015G018200 [exp] 669 / 0 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.012G002800 [exp] 653 / 0 AT1G66920 346 / 2e-111 Protein kinase superfamily protein (.1.2) Potri.012G003000 [exp] 651 / 0 AT1G66920 356 / 5e-115 Protein kinase superfamily protein (.1.2) Potri.012G003500 [exp] 647 / 0 AT1G66920 358 / 4e-116 Protein kinase superfamily protein (.1.2) Potri.007G125600 [exp] 608 / 0 AT5G38260 357 / 3e-115 Protein kinase superfamily protein (.1) Potri.017G035500 [exp] 607 / 0 AT1G66920 336 / 2e-107 Protein kinase superfamily protein (.1.2) Potri.007G126200 [exp] 536 / 0 AT1G66920 333 / 3e-107 Protein kinase superfamily protein (.1.2) Potri.007G125100 [exp] 508 / 1e-176 AT1G66920 347 / 2e-113 Protein kinase superfamily protein (.1.2) Potri.012G003400 [exp] 490 / 3e-169 AT1G66920 238 / 2e-71 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10014923 pacid=23152782 polypeptide=Lus10014923 locus=Lus10014923.g ID=Lus10014923.BGIv1.0 annot-version=v1.0 ATGGATCTGCAAACTCTTTTAGTTTGTGTTATTCTGCTAGCCTTATCACACCATGGGCGAGGTCTTACCGGCTGCCAAGAATCAAGATGCGGTCGCCGCG GCCCAAAAATCAGATTCCCTTTCCGGCTAAAGGACAGGCAACCGGTGAACTGTGGCTATCCGGGGTTTGATTTATCTTGCAACGAGATCGAGCAAACAGT GCTTGAGCTACCAAATTCAGTGGAGCTATACATCCAAAAGATCGACTATAGAGCCCAGAGCATTGTAACAGCTGACCCTGATGGTTGCCTGCCAAGACAA GCAAGAAACTTCAATCTGTCGGCTTCTCCTTTCCAGTTTCAAGGCCTGGCAACATTTGGCGTAGGTTATGTGTTTTTCAACTGTTCAGCTGTGGAGAGAA ACTTATTTAACCAAGTCCCATGTCTGAGTACTCCGAGCTTCGATGTTTATGCCTTCAATAGTCTAATAACTATTGATCTTCTGCCCCTGAAATCTTGTAC CAAGCTCTATAGCACCTTAGAAATTCCAGACGAAGTTGTCAATCCTCCATTCAATACTCTTCATTTAAACTGGACACAGCCTGGATGTGGCCATTGCGCA GCTCAAGGCCAGAGATGTAGATCGTCGAACAGCACAACTGGATATGAATGTTACATTCCGGATGGAAATCAAGCTGCACGCAGGAAGATCATGATAGCAG GGATCGTAGTTGGCTCATTTCTATTGCTAGCGGTGCTTAGCAGCTCACTCTACATCTATCATTCCAACAGAACAGAAAAGGAAAATCAGGCAAAAATAGA AAGATTCCTAGCGGACTACAAAGCCATGAAGCCAGCAAGATACTCATACGCTGATCTGAAAAGGATCACAAACAATTTCAACCACAAGTTAGGTGAAGGA GCTTACGGAACAGTATTCAAAGGCAGGCTGTCCAATGAGATCCACGTCGCCGTGAAACTCCTCACCGGCTCAACAGCGACGAACGGCGACGAGTTCATCA ACGAGGTCGGGACCATGGGAGGCATCCACCACGTCAACGTCGTCCGCCTCGTCGGATTCTGCGCCGACGGATTCAGAAGAGCTCTCGTTTACGAGTACCT GCCCAACGAATGCCTAGAGAAATTCATTTCAAACAAAAACAACCAAAACCTAGGCTGGGAAAAGCTACTGGAAATCGCGATAGGTATAGCCAAAGGGATC GAGTACCTCCACCACGGATGCGAAAATCAGATCCTCCACTTCGACATCAAGCCACGCAACATCCTCCTCGACGTCAACCTCAGCCCTAAAATAGCCGATT TCGGGCTGGCGAAGCTATGCGCGAAGGACCAGAGTGCAATCATCATGACCGCAGCTCGAGGAACCATTGGCTACATAGCTCCGGAAGTCTTCTCGCGAAA CTTCGGCAACGTCTCGTACAAGTCCGATGTTTACAGCTACGGGATGCTGCTGCTGGAGATGGTGGGGGGGAGGAAGAACATGGACGAGGTCGACTCCAGT AGTAATCTGAGCCAGATCTACTTTCCTGAGTGGATATACAAGCATTTGGATCGGATCGACGAGGAAGGAGACGATGCCAAGATCGCGAGGAAGCTTGCCA TCGCTGGCTTGTGGTGTATCCAGTGGTACCCCGGGGATCGTCCTTCGATGAGCGGTGTTGTTCATATGCTGGAAGTAGACGGTGGAGAAGGTCTGTCGAT GCCGCCGAATCCGTTTTCTTCGTCGGAGCGTGGTAAGGGAGTGGAGAGGATGGTTGTTCTTCCCGTGTTTGACGCCATTGCTGAAGAATGA
AA sequence Show only first row Show all	>Lus10014923 pacid=23152782 polypeptide=Lus10014923 locus=Lus10014923.g ID=Lus10014923.BGIv1.0 annot-version=v1.0 MDLQTLLVCVILLALSHHGRGLTGCQESRCGRRGPKIRFPFRLKDRQPVNCGYPGFDLSCNEIEQTVLELPNSVELYIQKIDYRAQSIVTADPDGCLPRQ ARNFNLSASPFQFQGLATFGVGYVFFNCSAVERNLFNQVPCLSTPSFDVYAFNSLITIDLLPLKSCTKLYSTLEIPDEVVNPPFNTLHLNWTQPGCGHCA AQGQRCRSSNSTTGYECYIPDGNQAARRKIMIAGIVVGSFLLLAVLSSSLYIYHSNRTEKENQAKIERFLADYKAMKPARYSYADLKRITNNFNHKLGEG AYGTVFKGRLSNEIHVAVKLLTGSTATNGDEFINEVGTMGGIHHVNVVRLVGFCADGFRRALVYEYLPNECLEKFISNKNNQNLGWEKLLEIAIGIAKGI EYLHHGCENQILHFDIKPRNILLDVNLSPKIADFGLAKLCAKDQSAIIMTAARGTIGYIAPEVFSRNFGNVSYKSDVYSYGMLLLEMVGGRKNMDEVDSS SNLSQIYFPEWIYKHLDRIDEEGDDAKIARKLAIAGLWCIQWYPGDRPSMSGVVHMLEVDGGEGLSMPPNPFSSSERGKGVERMVVLPVFDAIAEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67000			Protein kinase superfamily pro...		Lus10014923 [exp]	0	1
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	5.1	0.9451
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10022591 [exp]	7.7	0.9349
AT1G34320			Protein of unknown function (D...		Lus10017136 [exp]	10.6	0.9039
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	10.8	0.9208
AT4G14440		HCD1, ATECI3	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10041154 [exp]	14.0	0.9046
					Lus10033269 [exp]	14.8	0.9278
AT2G32190			unknown protein		Lus10039015 [exp]	15.5	0.9151
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10002215 [exp]	16.9	0.8620
AT4G27290			S-locus lectin protein kinase ...		Lus10038554 [exp]	18.7	0.8973
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10025690 [exp]	19.0	0.9012

Compare expression of checked genes

Lus10014923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.