Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66920 325 / 2e-102 Protein kinase superfamily protein (.1.2) AT5G38280 304 / 4e-94 PR5K PR5-like receptor kinase (.1) AT1G66910 294 / 3e-90 Protein kinase superfamily protein (.1) AT5G38260 293 / 3e-90 Protein kinase superfamily protein (.1) AT1G67000 292 / 9e-88 Protein kinase superfamily protein (.1) AT1G66930 286 / 3e-87 Protein kinase superfamily protein (.1) AT1G66980 294 / 5e-87 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G38240 283 / 6e-87 Protein kinase family protein (.1) AT4G18250 289 / 7e-87 receptor serine/threonine kinase, putative (.1) AT1G70250 286 / 4e-86 receptor serine/threonine kinase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025492 [exp] 509 / 2e-173 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10022359 [exp] 478 / 5e-162 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008362 [exp] 471 / 3e-160 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10025554 [exp] 424 / 8e-143 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10025545 [exp] 361 / 2e-120 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10008335 [exp] 373 / 7e-120 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10027119 [exp] 364 / 1e-118 AT5G38260 210 / 3e-60 Protein kinase superfamily protein (.1) Lus10025553 [exp] 353 / 6e-113 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10014923 [exp] 337 / 1e-107 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G018600 [exp] 686 / 0 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.007G125450 [exp] 582 / 0 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.017G009400 [exp] 568 / 0 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.007G125000 [exp] 568 / 0 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.007G125800 [exp] 563 / 0 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G126100 [exp] 560 / 0 AT1G70250 290 / 3e-87 receptor serine/threonine kinase, putative (.1) Potri.017G009100 [exp] 558 / 0 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G007900 [exp] 548 / 0 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.017G008800 [exp] 538 / 0 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.017G008600 [exp] 489 / 4e-166 AT5G38260 325 / 9e-103 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10014924 pacid=23152748 polypeptide=Lus10014924 locus=Lus10014924.g ID=Lus10014924.BGIv1.0 annot-version=v1.0 ATGCTTGCTTCTTTGAGGTCTCCTTTCTATGGGGAAAGGGCAGTCTATGGTTCGAAGATGAAGCCCACTTTGACCGATCTCACTGCTGTTCTTTCAATTC TCGTCCTTCTCCAGGTTTGCAGTGCCCAGAACAACAGCCATCACTGTGCTCCTTCTTCATGTGGAAACATCCCGATAAACTATCCTTTTCGGCTAAGAGG CGATCCACAGTACTGCGGCTTCCATCTGTATGAGCTAGTCTGCGAGCAGAACAATGTCACAGTTTTATACATGTCTGAAGGCAAATACAATGTCCAAGCC ATTCACTACAGCAACTTATCGATTAGACTGGTCGATGCTGCTGTTCAGAAGGACAACTGTTCCTCGATCCCTCAGTACTCTCTCACCAGAAGCAACTTCA CTATCCAGCCACATACGTATAACTGGGTTGGATCATACAACGAAGAACCAAGGATTGCAACGTTTGTCAAGTGTGCCAACCCAGTGAACTCGCCTCGTTA CGTGGACACCGGTCCTTGCATAAATGAAACACATACTTATGTGATGGTTGGTGGGAATTTGACGGAGATTGAGGATTCGTGCGAGGTAGAGTTGCAAGTT CCATCGTCATTGGTCGTGAAGGGTGGTCATGAAAACATTACCTTCCTCGACATACATAATGACTTGGTGAATGGGTTCGAGCTCAATTGGTACCGAGTTA CCTGTATGAGTTGCAGAGGCGAGGAGTATTGTGGTATGCTTGATCGTTCTTCACCAGATTGTTCCACAGGAGAAACCTTCTTCTCAAGAATTCACTACAT TTTCACTTGCCCATGCGTGCTAGCGTTCTTGATCTACAAATGGAGAAGGCGGCACTTATCGATGTTCAACTCCGTCGAGCAATTTCTCCAGAGCCAGAAC AACTTCACACCAGTCAGATACTCTTATGCGGACATCAAGAAGATGACAAGTGGCTTCAGGGACAAGTTAGGGGAAGGTGGGTACGGATGTGTCTACAGAG GGAAACTTCGAAGTGGGCGTTTTGCAGCGGTGAAGATGCTATTGGGGTCGTCCAAGGCAAACGGCCAGGATTTCATCAACGAAGTGGCCACAATCGGGAG GATTCACCATGTTAACGTGGTGAGGCTCGTTGGCTACTGCTCTGAGAGATCCAAACGCGCCCTTGTCTACGACTTCATGCCCAATGGCTCCCTCGATAAG TACACCAATTCGATCCCGGGCCACACTCTCTTGAGCTGGAACCAAATGTTCAGGATCTGCCTAGGTGTAGCTAGAGGGATAGAATACCTTCACCTAGGTT GCGATATGCAAATCCTACACTTCGACATCAAGCCACACAACATCCTCCTCGACGAGAACTTCACCCCGAAGATCTCCGATTTCGGGTTGGCGAAGCTCCA CCCCGCAGCCAGCAACAACACCATCTCCCTCACCGCAGCTCGAGGCACCATCGGGTACATCGCCCCGGAGCTCTTCTACAAGAACATAGGACGCATCTCC TACAAGGCCGACGTGTACAGCTTCGGAATGCTGGTCTTGGAGATGGCAGGGAAGCGTAAAGGATCGAACCCCGAACCAGCTGCATCGACCGGTTCGAGTT ACTTCCCTCACTGGGTTTACAACCAAGTTGCGGGTACTGAACAGATGATGATAAACACGGAAGAAGAGAGGATTGCGAAGAAGATGGTGATCGTCGCGTT GTGGTGCATACAGATGAAGCCCGAGAATCGGCCATCCATGAGTAAAGTCGCGGAGATGCTTGAAGGTGAATTGGAGAGCTTGCCATTGCCTCCTAGGCCT GGTTCGTACCCGGACGTTTCATCATTGGAGACAGAGTGTTCCTCTTCTTATCGTACTAGTACATTGTACTCTTCTTCTGATGGTACCATTTACTCTGGTT CCCCTGAAGCTGCAAATCTGGTTGTGTATTCTGGATAA
AA sequence Show only first row Show all	>Lus10014924 pacid=23152748 polypeptide=Lus10014924 locus=Lus10014924.g ID=Lus10014924.BGIv1.0 annot-version=v1.0 MLASLRSPFYGERAVYGSKMKPTLTDLTAVLSILVLLQVCSAQNNSHHCAPSSCGNIPINYPFRLRGDPQYCGFHLYELVCEQNNVTVLYMSEGKYNVQA IHYSNLSIRLVDAAVQKDNCSSIPQYSLTRSNFTIQPHTYNWVGSYNEEPRIATFVKCANPVNSPRYVDTGPCINETHTYVMVGGNLTEIEDSCEVELQV PSSLVVKGGHENITFLDIHNDLVNGFELNWYRVTCMSCRGEEYCGMLDRSSPDCSTGETFFSRIHYIFTCPCVLAFLIYKWRRRHLSMFNSVEQFLQSQN NFTPVRYSYADIKKMTSGFRDKLGEGGYGCVYRGKLRSGRFAAVKMLLGSSKANGQDFINEVATIGRIHHVNVVRLVGYCSERSKRALVYDFMPNGSLDK YTNSIPGHTLLSWNQMFRICLGVARGIEYLHLGCDMQILHFDIKPHNILLDENFTPKISDFGLAKLHPAASNNTISLTAARGTIGYIAPELFYKNIGRIS YKADVYSFGMLVLEMAGKRKGSNPEPAASTGSSYFPHWVYNQVAGTEQMMINTEEERIAKKMVIVALWCIQMKPENRPSMSKVAEMLEGELESLPLPPRP GSYPDVSSLETECSSSYRTSTLYSSSDGTIYSGSPEAANLVVYSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67000			Protein kinase superfamily pro...		Lus10014924 [exp]	0	1
AT2G01080			Late embryogenesis abundant (L...		Lus10005728 [exp]	113.1	0.8507

Compare expression of checked genes

Lus10014924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.