Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53130 1025 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT1G01340 842 / 0 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT4G01010 840 / 0 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT2G46430 814 / 0 CNGC3.C, ATCNGC3 cyclic nucleotide gated channel 3 (.1.2) AT4G30560 749 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT2G23980 743 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT5G57940 739 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT1G19780 707 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT1G15990 706 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT2G28260 677 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038815 [exp] 1231 / 0 AT5G53130 971 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10019014 [exp] 1194 / 0 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10003395 [exp] 1163 / 0 AT5G53130 1117 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10036260 [exp] 726 / 0 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10022155 [exp] 725 / 0 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10041662 [exp] 716 / 0 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10024073 [exp] 713 / 0 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10021461 [exp] 696 / 0 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10015510 [exp] 678 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G002200 [exp] 1076 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.015G019100 [exp] 1075 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.002G170000 [exp] 881 / 0 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.014G097900 [exp] 879 / 0 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.018G106100 [exp] 752 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.001G043900 [exp] 709 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.003G183000 [exp] 701 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.009G010700 [exp] 693 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G097600 [exp] 680 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.017G067000 [exp] 639 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10014925 pacid=23152768 polypeptide=Lus10014925 locus=Lus10014925.g ID=Lus10014925.BGIv1.0 annot-version=v1.0 ATGAACTATACAAAGGAGAAGTTTGTTAAGTTTCATGAATGGAGATCAGAGAAAAGTTCAGAATCAGACTACCAACAACCAGGAAAAGTCAGAACCAAGA TAAGCTCATTGTCTGATAAGTTCAAGAGGAGGCTAGGATCCGGATCAGAGAGGTTCAGTAAGATCAAAAAATCCTTAAAATCATACTCCTTCAACGATGA AGGCTCGAACAGTGGTGGCTCTAGCTCTCGAATCCTTGATCCGCAGGGAGCCTTCCTGCAGAAATGGAACAAGATATTTGTCCTATCTTGCTTCCTTGCT GTGTCCTTGGACCCTTTGTTCTTCTACGTCCCTCTCATCGATCCCGAGAACAGCTGCCTTAAGCTCGACAACAAGATGCAGATCACGGCCAGCGTGCTCC GGTCCTTCACCGACATGTTCTACATTCTCCACATCGTCTTCCAGTTCCGTACCGGCTTCATTGCGCCTTCTTCCCGTGTTTTCGGGAGAGGGGTTCTGGT TCAGGACGGATTGGCGATTGCGAAGAGGTACGTGGCTTCGTACTTCTTGATCGACATCCTCGCATTGCTACCTCTCCCACAGATGGTGATTCTAATCATT ACTCCAAGGCTTCAAGGCTCGAGAACACTGAACACAAAGAACTTGTTGAAGTTCGTCGTGATAATCCAGTATCTACCGAGGATCATTCGAATTTATCCAT TGTATAGTGAAGTTACCAGGACTTCTGGTATACTTACAGAAACTGCTTGGGCTGGAGCTGCATTCAATCTGTTTCTGTACATGCTTGCTAGTCACGTGCT TGGAGCATTTTGGTACTTGTTTTCGGTAGAGAGGCTCACAGAGTGTTGGAAGAAAGCCTGCGACGCTATTTCGTGCGATCGCGATATGCTCTACTGTGAC GGTCCCAGAGGTTTTAGTAAGGCGTTCTTGAATACTTCGTGTCCTGTAAATCCGGAGAATGCAGATGTGTTCAATTTCGGGATATTCCTCGATGGGCTCC AGTCTGGCGTTGTGGCGACTCATGACTTTCCGAAGAAGTTTTTCTACTGTTTCTGGTGGGGACTTCGCAATCTCAGTTCTCTCGGTCAGAACCTTGCAAC GAGCACATTTGTGTGGGAGATCTGCTTCTCAGTTGCTATCTCGATCTTCGGATTAGTGCTGTTTGCGTTCCTCATTGGAAATATGCAGACTTTCTTGCAA TCCACGACTACTAGATTGGAGGAAATGAGAGTGAAAAGGCGTGACGCGGAGCAATGGATGTCCCACCGAATGCTTCCTGATAATTTAAAGCAGCGAATCA GGCGGCACGAGCAGTACAAGTGGCAAGAAACTCGAGGAGTCGAAGAGCAGAATCTCGTCCATAATCTTCCCAAAGATATTCGAAGGGACATCAAACGTCA CCTCTGTTTGGCACTTCTAATGAGAGTGCCAATGTTCGAAAAGATGGATGATCAGCTGTTGGATGCAATGTGCGACCGTCTGAGGCCGGCGCTGTACACG GAGGAGAGCTACATTGTCCGCGAAGAGGACCCGGTCGACGAGATGTTGTTCATCATGAGGGGAAAGCTACTAACCATCACGACAAATGGCGGAAGGACGG GCTTCTTCAACTCAGAGAAGCTCAAGGCAGGGGATTTCTGCGGCGAGGAGCTTCTCACGTGGGCGCTGGACCCTCACACGTCGTCCAACCTCCCCATTTC GACCAGGACCGTGAGGACCATCACGGAAGTGGAAGGGTTCGTGCTGACCGCCGAGGACTTGAAGTTCGTGGCGTCCCAATTCCGCCGGCTCAACAGCAAG CAGATCCGCCACACGTTCCGGTTCTACTCGCAGCAGTGGAGGACGTGGGCCGCCTGCTTCATACAGGCCGCGTGGAGACGATACAGTAAGAAGAAGCTCG AGGAGGCGCTCAGGCAGGAAGAAGACAGGCTTCAAGACGCGCTGGCCAAGGCCAGCGCAAACTCGGCGCCTAGCCTTGGCGCCACCATCCCCCCCTCTCT TTCCTAA
AA sequence Show only first row Show all	>Lus10014925 pacid=23152768 polypeptide=Lus10014925 locus=Lus10014925.g ID=Lus10014925.BGIv1.0 annot-version=v1.0 MNYTKEKFVKFHEWRSEKSSESDYQQPGKVRTKISSLSDKFKRRLGSGSERFSKIKKSLKSYSFNDEGSNSGGSSSRILDPQGAFLQKWNKIFVLSCFLA VSLDPLFFYVPLIDPENSCLKLDNKMQITASVLRSFTDMFYILHIVFQFRTGFIAPSSRVFGRGVLVQDGLAIAKRYVASYFLIDILALLPLPQMVILII TPRLQGSRTLNTKNLLKFVVIIQYLPRIIRIYPLYSEVTRTSGILTETAWAGAAFNLFLYMLASHVLGAFWYLFSVERLTECWKKACDAISCDRDMLYCD GPRGFSKAFLNTSCPVNPENADVFNFGIFLDGLQSGVVATHDFPKKFFYCFWWGLRNLSSLGQNLATSTFVWEICFSVAISIFGLVLFAFLIGNMQTFLQ STTTRLEEMRVKRRDAEQWMSHRMLPDNLKQRIRRHEQYKWQETRGVEEQNLVHNLPKDIRRDIKRHLCLALLMRVPMFEKMDDQLLDAMCDRLRPALYT EESYIVREEDPVDEMLFIMRGKLLTITTNGGRTGFFNSEKLKAGDFCGEELLTWALDPHTSSNLPISTRTVRTITEVEGFVLTAEDLKFVASQFRRLNSK QIRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEEALRQEEDRLQDALAKASANSAPSLGATIPPSLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10014925 [exp]	0	1
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038815 [exp]	1.0	0.9317
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10026346 [exp]	3.7	0.8763
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041683 [exp]	4.6	0.8581
AT1G19270		DA1	DA1 (.1)		Lus10018789 [exp]	4.9	0.8873
AT3G25610			ATPase E1-E2 type family prote...		Lus10019152 [exp]	7.5	0.8833
AT2G39650			Protein of unknown function (D...		Lus10023412 [exp]	7.7	0.8830
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10030496 [exp]	8.8	0.8646
AT5G07610			F-box family protein (.1)		Lus10024021 [exp]	9.1	0.8445
AT1G11340			S-locus lectin protein kinase ...		Lus10007604 [exp]	9.5	0.8918
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031891 [exp]	12.2	0.8807

Compare expression of checked genes

Lus10014925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.