Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53140 449 / 2e-158 Protein phosphatase 2C family protein (.1) AT4G31750 358 / 3e-124 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 357 / 3e-123 Protein phosphatase 2C family protein (.1) AT5G24940 357 / 1e-121 Protein phosphatase 2C family protein (.1) AT1G43900 313 / 8e-106 Protein phosphatase 2C family protein (.1) AT1G78200 211 / 1e-66 Protein phosphatase 2C family protein (.1.2) AT1G34750 209 / 3e-66 Protein phosphatase 2C family protein (.1) AT2G20630 199 / 3e-62 PIA1 PP2C induced by AVRRPM1 (.1.2) AT4G28400 196 / 7e-61 Protein phosphatase 2C family protein (.1) AT1G22280 190 / 7e-59 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019012 [exp] 501 / 1e-179 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10039341 [exp] 466 / 8e-165 AT5G53140 444 / 1e-154 Protein phosphatase 2C family protein (.1) Lus10020104 [exp] 353 / 4e-122 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 342 / 4e-118 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 333 / 3e-115 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 333 / 3e-115 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10029745 [exp] 305 / 6e-100 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10042775 [exp] 300 / 9e-99 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10020924 [exp] 202 / 1e-63 AT1G34750 438 / 7e-157 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G019200 [exp] 468 / 3e-167 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.012G002100 [exp] 459 / 1e-163 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 358 / 2e-124 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 354 / 7e-123 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.005G186001 [exp] 327 / 1e-112 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.002G074500 [exp] 328 / 2e-112 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 213 / 7e-68 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 209 / 3e-66 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.017G013300 [exp] 199 / 3e-62 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.006G081400 [exp] 194 / 6e-60 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10014926 pacid=23152826 polypeptide=Lus10014926 locus=Lus10014926.g ID=Lus10014926.BGIv1.0 annot-version=v1.0 ATGATGGTTGAGTCCGGATCGACTGCTGCAAAAGCCGAGCCAACAATCATAGACCTTTTGAGGGCAGAGAAAGCTGAGAAAGAGAAAAATGACCCTGATG GATGCATCAGCGGTGGGTGTAAAAGTGAAGATGAGAAACTGAGTTGTGGGTATGCAAGTATCAGAGGGAAGAGAGCAACCATGGAGGACTTCTATGATAT TAAAACAACAAAGCTTGATGAGAAAATAGTTTGCATGTTTGGAATATTCGACGGCCACGGTGGTTCTCGAGCATCAGAGTATTTAAAGCAACACCTCTTT GATAACTTAATGAAGCATCCACAATTCTTGACAGATATCAAATCAGCTATAAGTGCAACATATCAACAAACTGATGCCAACTTCTTGGATTCTGAAAAGG ACACATACAGAGATGATGGCTCTACTGCCTCAACAGCAGTCTTAGTAGGTGACCATCTGTATGTTGCCAATGTCGGGGATTCTCGAACTGTGGTATCCAA ATCTGGAAAAGCAATTGCCTTGTCCGAGGATCATAAACCTAACCGAATCGATGAGCGAAGGAGAATCGAGAATGCTGGGGGCATAGTGATGTGGGCAGGC ACATGGAGGGTCGGTGGCGTCTTGGCTATGTCCCGTGCATTCGGGAACCGTATGTTGAAGCAATATGTTGTTGCAGAACCTGAAATTCAGGATCTGAAGA TAGACAACGAATTTGAGCTGCTAGTCCTTGCAAGCGACGGACTATGGGATGTGATATCAAACGAAGACGCCACCTCGCTAGCCCGAACCGAACAAGACCC CGAGGCATCAGCAAAGAAGCTCGTCGAGGCTGCTTTCGCGAGAGGCAGCGCGGACAACATCACGTGCATCGTCGTCAGATTCCACCACCATATCATGTCT AAGTCTTCCGAATTAGCCCCTCCTCCAAAGGATAATACTACAACAGAATCGTAA
AA sequence Show only first row Show all	>Lus10014926 pacid=23152826 polypeptide=Lus10014926 locus=Lus10014926.g ID=Lus10014926.BGIv1.0 annot-version=v1.0 MMVESGSTAAKAEPTIIDLLRAEKAEKEKNDPDGCISGGCKSEDEKLSCGYASIRGKRATMEDFYDIKTTKLDEKIVCMFGIFDGHGGSRASEYLKQHLF DNLMKHPQFLTDIKSAISATYQQTDANFLDSEKDTYRDDGSTASTAVLVGDHLYVANVGDSRTVVSKSGKAIALSEDHKPNRIDERRRIENAGGIVMWAG TWRVGGVLAMSRAFGNRMLKQYVVAEPEIQDLKIDNEFELLVLASDGLWDVISNEDATSLARTEQDPEASAKKLVEAAFARGSADNITCIVVRFHHHIMS KSSELAPPPKDNTTTES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53140			Protein phosphatase 2C family ...		Lus10014926 [exp]	0	1
AT1G78110			unknown protein		Lus10012052 [exp]	3.9	0.7141
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Lus10017706 [exp]	11.2	0.6762
AT5G11110		SPSA2, KNS2, AT...	sucrose-phosphate synthase A2,...		Lus10008056 [exp]	14.2	0.7134
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Lus10038119 [exp]	20.2	0.7043
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10027946 [exp]	20.8	0.6237
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10006146 [exp]	21.7	0.6998
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10026626 [exp]	26.3	0.6791
AT2G43430		GLY1, GLX2-1	GLYOXALASE II, glyoxalase 2-1 ...		Lus10033662 [exp]	28.8	0.6282
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Lus10008048 [exp]	32.2	0.6618
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10013235 [exp]	38.5	0.6188

Compare expression of checked genes

Lus10014926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.