Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53150 311 / 6e-96 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G35753 237 / 1e-69 Domain of unknown function (DUF3444) (.1) AT2G05230 237 / 1e-68 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 237 / 1e-68 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G50115 212 / 2e-61 unknown protein AT2G25560 214 / 1e-60 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37380 180 / 4e-50 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT4G19570 181 / 1e-49 Chaperone DnaJ-domain superfamily protein (.1) AT5G37440 171 / 2e-48 Chaperone DnaJ-domain superfamily protein (.1) AT5G37750 169 / 3e-48 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038816 [exp] 1149 / 0 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 508 / 2e-172 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 492 / 5e-166 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012334 [exp] 264 / 6e-78 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10006380 [exp] 263 / 2e-77 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10001171 [exp] 211 / 1e-61 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001744 [exp] 212 / 2e-61 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 174 / 3e-45 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 171 / 3e-44 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G001100 [exp] 657 / 0 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 633 / 0 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 544 / 0 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 341 / 4e-107 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 330 / 5e-103 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 322 / 1e-99 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 266 / 1e-79 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 265 / 6e-79 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 184 / 8e-49 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 183 / 2e-48 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10014927 pacid=23152753 polypeptide=Lus10014927 locus=Lus10014927.g ID=Lus10014927.BGIv1.0 annot-version=v1.0 ATGGAATGCAATAAAGATGAAGCACTCAGAGCGAAAGAAATCGCGGAGAGGAAGCTTAACGAGAAGGACTATGTCGGTGCAAAGAAGTTTGTCCTCAAGG CTCAGAACTTGTACCCCGGTCTGGATGGCCTACCGCAAATGTTGACTATGCTAGAGATCTATCTTTCTGCTCAGAATGTAATAAGCAACGGCGAAGTTGA TTGGTATAATGTTCTTGGTGTCAGTCCCTGGGCTGACGAGGACACAGTGAGGAAGCAGTACCGAAAGCTAGCTCTTGCCCTCCACCCGGACAAGAATAAG TCAATGGGCGCCGATGGGGCGTTCAAGTTGGTTTCCGAAGCCTGGAGGTTGTTATCTGATAAAGACAGCAGAGTAGCATACAACAGGAAGCTAAACCATA GAGATAAGCCCTCGTCGACGAAGCAACCTAGTGGAAATGCTAATGGCTTTCATACTTCGAGCCGTTCTGTTAATCCTCCTGCTGCAAAGACAAAGAATCC TCCGAATAAGAAGCAGAATATGTTTTCAGGGACCGAGGCGAACAAGCCGGATACTTTCTGGACGATTTGTGACAAATGCAAGACGCAATTTGAGTACCTT AGGGTTTATCATAATCACACCCTTTTGTGCCCTAACTGTCACCAGGCATTTCATGCTGTAGAGAGAGCTCCACCTCCCAACGTCATGCCTGATCAATCTC GATCTCATCAGAAAAAGCATCAACAGAAATCAAAGCCGAAGCAGCCTCCTCCTCCTGCTGCTGCAAGAAACAATAATGCCGGAATGAATCATAGTTCCGG AGGGAGTAGTCGTGTAGTAAATGGTGCTGGGGGGACAAATAATGCTTCGACATCTACTGGAGCTCCTAGTGTTCAGGACTGGATTAGGAACCATTTGCCA AAGAAGAGGGAGAGTGACGTTATGCCTCCTGAAGAAGATCAATTGGTTAAAAGGAAGAGAGCAAATGAAACTAAAATGGAAGAAACATCCGATCCAGCTA ATGTGTTTGAGTTTCATGTTGAAATCGGAAAGGTATACAGAGATTTAACTTCTGTTGAGATTCGGAACATTTTGGTCGGGAAAGCACGGTTGGTGATCAG CAAGAAGCTCGATGAATGGAGCTCGAGAGAAGTGAAAGTAAGCAGCAGCAGTGGGAAGAAGAAATCCACGGGCGAATCTAAGATCCAGTTGAATTCGGAA CAAGGCAAAGGTTCTGTGCCTCAACTAATGTCGATCACTGTACCGGATCCGGACTTTCACAACTTCGATTCAGATCGGACCGAGAGTTCGTTCAGGGACG ACCAAGTGTGGGCTGCTTACGACGAGAACGACGGGATGCCACGTTACTACGCAAAAATTCACAAGGTGGTATCTTTGCAGCCGTTTAAGATGAAGATCAG CTGGCTCAACTCGAGAACAAGCACCGAGTTTGGCACTACTCTGGACTGGGTGGGCTCCGGATTCCTGAAAACCTGCGGGGATTTCAGGATCGGCAGACAC GAGATGGGCGAGACGCTGAATGCCTTCTCCCACGAGGTGAAATGGACGAAAGTGCCCCGCGGGCTCATCCGGATACTCCCTTCCAAAGGAGACGTGTGGG CTCTGTACCGGAACTGGTCTCCTGAGTGGAACCGGAACACCCCGGCCGAAGTGGTACGCAGGTACGACATGGTGGAAGTGCTCGAAGATTATGACGAAGA ACGAGGCACGTCGGTCGTTCCTTTAGTGAAACTCAAAGGTTTCAAAACTGTCTTCCTCAAACCATCAATGGATGACGACGGCAACTCCAATGTAGTAATG AGGATCCCAAGGGAAGAGATGTTCCGATTCTCGCACCAGGTACCACATCACCTCCTCACAGGGGATGAAGCTGCGAACGCGCCGAAGGGATGCCTCGATC TAGACCCTGCCGCGACACTATTGGTGCTTCTACAAGATGAGATGCAGCAGGAAGGTTAA
AA sequence Show only first row Show all	>Lus10014927 pacid=23152753 polypeptide=Lus10014927 locus=Lus10014927.g ID=Lus10014927.BGIv1.0 annot-version=v1.0 MECNKDEALRAKEIAERKLNEKDYVGAKKFVLKAQNLYPGLDGLPQMLTMLEIYLSAQNVISNGEVDWYNVLGVSPWADEDTVRKQYRKLALALHPDKNK SMGADGAFKLVSEAWRLLSDKDSRVAYNRKLNHRDKPSSTKQPSGNANGFHTSSRSVNPPAAKTKNPPNKKQNMFSGTEANKPDTFWTICDKCKTQFEYL RVYHNHTLLCPNCHQAFHAVERAPPPNVMPDQSRSHQKKHQQKSKPKQPPPPAAARNNNAGMNHSSGGSSRVVNGAGGTNNASTSTGAPSVQDWIRNHLP KKRESDVMPPEEDQLVKRKRANETKMEETSDPANVFEFHVEIGKVYRDLTSVEIRNILVGKARLVISKKLDEWSSREVKVSSSSGKKKSTGESKIQLNSE QGKGSVPQLMSITVPDPDFHNFDSDRTESSFRDDQVWAAYDENDGMPRYYAKIHKVVSLQPFKMKISWLNSRTSTEFGTTLDWVGSGFLKTCGDFRIGRH EMGETLNAFSHEVKWTKVPRGLIRILPSKGDVWALYRNWSPEWNRNTPAEVVRRYDMVEVLEDYDEERGTSVVPLVKLKGFKTVFLKPSMDDDGNSNVVM RIPREEMFRFSHQVPHHLLTGDEAANAPKGCLDLDPAATLLVLLQDEMQQEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10014927 [exp]	0	1
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10027760 [exp]	5.7	0.8603
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029462 [exp]	8.3	0.8503
AT1G10050			glycosyl hydrolase family 10 p...		Lus10011465 [exp]	9.9	0.8387
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10038816 [exp]	11.3	0.8368
AT2G21390			Coatomer, alpha subunit (.1)		Lus10025780 [exp]	12.5	0.8576
AT5G53480			ARM repeat superfamily protein...		Lus10008863 [exp]	13.9	0.8428
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001368 [exp]	16.6	0.8495
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10018902 [exp]	23.8	0.8367
AT3G13290		VCR	varicose-related (.1)		Lus10039116 [exp]	27.1	0.8219
AT5G53480			ARM repeat superfamily protein...		Lus10008864 [exp]	27.9	0.8226

Compare expression of checked genes

Lus10014927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.