Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32230 485 / 2e-167 PRORP1 proteinaceous RNase P 1 (.1) AT2G16650 303 / 6e-97 PRORP2 proteinaceous RNase P 2 (.1) AT4G21900 286 / 6e-90 PRORP3 proteinaceous RNase P 3 (.1) AT2G01740 61 / 1e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G21222 61 / 1e-09 protein kinase family protein (.1) AT1G10910 54 / 1e-07 EMB3103 EMBRYO DEFECTIVE 3103, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G04810 53 / 4e-07 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G04760 52 / 5e-07 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G50280 52 / 6e-07 EMB1006 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 52 / 1e-06 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038817 [exp] 728 / 0 AT2G32230 555 / 0.0 proteinaceous RNase P 1 (.1) Lus10039049 [exp] 655 / 0 AT2G32230 627 / 0.0 proteinaceous RNase P 1 (.1) Lus10038809 [exp] 648 / 0 AT2G32230 615 / 0.0 proteinaceous RNase P 1 (.1) Lus10043223 [exp] 311 / 1e-96 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10019535 [exp] 280 / 8e-88 AT4G21900 607 / 0.0 proteinaceous RNase P 3 (.1) Lus10043379 [exp] 158 / 5e-44 AT4G21900 369 / 7e-125 proteinaceous RNase P 3 (.1) Lus10012180 [exp] 64 / 3e-10 AT4G34830 800 / 0.0 PIGMENT DEFECTIVE 346, MATURATION OF RBCL 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 55 / 1e-07 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000909 [exp] 54 / 2e-07 AT1G74580 270 / 3e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G074100 [exp] 526 / 0 AT2G32230 662 / 0.0 proteinaceous RNase P 1 (.1) Potri.017G144900 [exp] 523 / 0 AT2G32230 671 / 0.0 proteinaceous RNase P 1 (.1) Potri.004G185200 [exp] 302 / 2e-96 AT2G16650 573 / 0.0 proteinaceous RNase P 2 (.1) Potri.009G145200 [exp] 297 / 3e-94 AT2G16650 568 / 0.0 proteinaceous RNase P 2 (.1) Potri.006G160300 [exp] 297 / 3e-91 AT2G32230 404 / 1e-130 proteinaceous RNase P 1 (.1) Potri.004G166600 [exp] 63 / 3e-10 AT4G34830 1044 / 0.0 PIGMENT DEFECTIVE 346, MATURATION OF RBCL 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G118500 [exp] 54 / 2e-07 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.001G276500 [exp] 54 / 2e-07 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G043101 [exp] 52 / 8e-07 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G109500 [exp] 52 / 1e-06 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014928 pacid=23152807 polypeptide=Lus10014928 locus=Lus10014928.g ID=Lus10014928.BGIv1.0 annot-version=v1.0 ATGTCCTTTCTCCACCATAGCTATCATGACCACACTTTGAAAGTTAGTACTAAAGCTCACCACTTTGGAAGAAGAGCCAATCTTTGTAGCCTGGCATCCT CTGCAGTGTCCCGTAATTCTGAGTCATCATCATCATCAGTGGCTAGAGTTTCCGGGAGAGAAAGGAAATCACAGAGGAAAGCTGCCCGAAATTCACCTGA GGTGCAACTTAGGCAGAAGTTTGATAGGTGCTCGAAAACCGGAGATTTAGACGAAGCACTTCGACTGTATGACGAGGCGCGAAGCAATGGTATACCTCTT AACCAACACGTTTACAATGCGTTGCTATACTTGTGTTCTTTGGATGAGGTGAAGTCATCTGATTTAGGTCTGAAAAGGGGGTTTGAGATACTTCAACAGA TGGTCAACGACAAAGTTGACCCCAACGAGGCGACATTTACAAACGCAACCAGGATTGCTGCCGGATTGGAAGATCCAGACAAGGCGTTCGAGTTGGTTAA GCAGATGAAAACTTTCAACATCCCTCCGAAGCTGAGATCGTATGGTCCAGCATTGTTCGGATACTGTAGTAATAAAGAGATGGCTGATAGAGCTTATGAA GTGTACTTGGACATGATTGGTTGTAAAGTAGTGCCTGAGGAGCCTGAGGTGTCAGCTATTTTGAAAGTGAGTTCTGATGCTGGAAAGGCAGACCGGGTTT ACGAGATGCTGCATTTGTTGCGAAGAACAGTTAGGCAGGTTACGGAATGTATGATGAGTGTGGTCGAAGGTTGGTTTGAGTCGGAAGCTGCTGGAAGAAG TGGTGAAGTGAAGTGGGATGTGAAGAACGTGAGGGAAGGAGTTGTTAAGGGAGGTGGAGGATGGCATGGGCAAGGTTGGTTAGGGACCGGGAAGTGGAAT GTTGTGAGGACTCAATTGGATGAGGATGGTGTTTGTTGCAGTTGCAAGGAGAAGCTCGTATGTATTGATATTGATCCGAGGGAGACGGAGCATTTCGCTA GCTCGTTGAGTTACTTGGCTTGCAAGAAAGAAGTCAAATCAGATTTCATCAGGTTCCAGCTTAATAATGTCGCGAACAAACTGCGCGAAATGAATCCATC AAAGAGATACCCTCTTATTATCTTGCACAAGAGCCGTATAAAGGGAGGTTCTGCTAATCCAAACAATCAGAGGCTGTTGGAGAGACGGATGAACTCCGGA TCGCTTTACACCACTCCGCCCGTACTGGTTATATGCTGCTGTGAGGTTCAAGAGTTTGTTGGTGACGATGATGAGATGAGAGACCACTTGTTCCAGTTAC TCGGAACGTCCTTCTTTCCTAGATGGAAGGAGAAGCATCAGGTTCGGATATCAGTATCGAATTCCGGAGTGAAACTACATATGCCGCCTCCGTATTCAAT TGTTACTCAGGAGTCCGAAACGGGTAGTTGGCACGTTCCGATGAAAACGGATGATGATCTCGAGACCACAAGACAATGGATATGTGCAACTAGACAGAGG GCATAG
AA sequence Show only first row Show all	>Lus10014928 pacid=23152807 polypeptide=Lus10014928 locus=Lus10014928.g ID=Lus10014928.BGIv1.0 annot-version=v1.0 MSFLHHSYHDHTLKVSTKAHHFGRRANLCSLASSAVSRNSESSSSSVARVSGRERKSQRKAARNSPEVQLRQKFDRCSKTGDLDEALRLYDEARSNGIPL NQHVYNALLYLCSLDEVKSSDLGLKRGFEILQQMVNDKVDPNEATFTNATRIAAGLEDPDKAFELVKQMKTFNIPPKLRSYGPALFGYCSNKEMADRAYE VYLDMIGCKVVPEEPEVSAILKVSSDAGKADRVYEMLHLLRRTVRQVTECMMSVVEGWFESEAAGRSGEVKWDVKNVREGVVKGGGGWHGQGWLGTGKWN VVRTQLDEDGVCCSCKEKLVCIDIDPRETEHFASSLSYLACKKEVKSDFIRFQLNNVANKLREMNPSKRYPLIILHKSRIKGGSANPNNQRLLERRMNSG SLYTTPPVLVICCCEVQEFVGDDDEMRDHLFQLLGTSFFPRWKEKHQVRISVSNSGVKLHMPPPYSIVTQESETGSWHVPMKTDDDLETTRQWICATRQR A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10014928 [exp]	0	1
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10032529 [exp]	1.4	0.9433
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10041957 [exp]	2.4	0.9395
AT1G15200			protein-protein interaction re...		Lus10003959 [exp]	4.2	0.9279
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	4.9	0.9337
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10043309 [exp]	7.7	0.9343
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10027932 [exp]	10.4	0.9221
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	10.5	0.9269
					Lus10021689 [exp]	11.0	0.9293
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10030375 [exp]	11.2	0.9319
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034468 [exp]	11.4	0.9329

Compare expression of checked genes

Lus10014928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.