Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53180 595 / 0 ATPTB2 polypyrimidine tract-binding protein 2 (.1.2) AT3G01150 500 / 2e-176 ATPTB1, PTB polypyrimidine tract-binding protein 1 (.1.2) AT1G43190 128 / 2e-32 PTB3 polypyrimidine tract-binding protein 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038820 [exp] 705 / 0 AT5G53180 567 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Lus10005233 [exp] 513 / 1e-180 AT3G01150 598 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Lus10030688 [exp] 477 / 1e-166 AT3G01150 557 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Lus10028566 [exp] 96 / 3e-21 AT1G43190 678 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Lus10018871 [exp] 91 / 1e-19 AT1G43190 680 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G029300 [exp] 652 / 0 AT5G53180 603 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Potri.015G020800 [exp] 634 / 0 AT5G53180 581 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Potri.004G123300 [exp] 533 / 0 AT3G01150 636 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.017G085400 [exp] 529 / 0 AT3G01150 607 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.002G066000 [exp] 125 / 2e-31 AT1G43190 726 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Potri.005G194700 [exp] 122 / 4e-30 AT1G43190 745 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10014931 pacid=23152765 polypeptide=Lus10014931 locus=Lus10014931.g ID=Lus10014931.BGIv1.0 annot-version=v1.0 ATGTCATCTGTATCGAGCCAGCCGCAGTTTCGCCTCACTCAGCCACCATCTAAGGTGCTGCACTTGCGAAACTTGCCATGGGAGTGTACGGAGGAAGAAC TGATCGAGCTTGGGAAGCCCTTTGGTAGAGTTATCAACACTAAGTGCAACGTGGGTGCGAACAAAAACCAGGCGTTCATCGAGTTTGCTGATTTGAACCA AGCCATTGCGATGATATCATACTATGCTTCATCTTCTGAGCCAGCACAAGTGAGAGGGAAAACCGTCTATCTGCAGTACTCTAATAGGCAAGAAATTGTG AACAACAAGACGACAGCTGATGTTGCAGGGAATGTTTTACTTGTGACCATTGAAGGTGCCGATGCTCGCCTTGTCAGCATCGACGTTTTGCACCTGACTA AGTTGATTGCTTTAACCTCTTACCTTGAGCATTGTTTTATGATGACGGAAACCTTTAGCTACACTACTGTTGGTAGCCTGCACTTGTTGAATTTGCTGGT GTTTTCAGCTTTCGGGTTTGTGCATAAGATTACAACTTTTGAGAAGACGGCTGGGTTCCAGGCGCTCGTGCAATTTACTGACACGGAAACTGCTACGTCT GCGAAAAATGCACTTGATGGAAGAAATATTCCTAGGTATCTTCTCCCTGACCACGTTGGACCATGTACCCTTAGGATCACATATTCAGCACATACAGATT TGAGTGTGAAATTCCAGAGCCACAGAAGCAGGGATTACACTAATCCGAATCTTCCTGTTGCGCCTTCAGCTATAGATGGAAGTGGTCTGTTTGCTGTTGG TATTGATGGCAAGAAACTAGAGCCTGAAAGTAATGTTCTTCTTGCATCAATAGAGAACATGCAGTACGCTGTCACATTGGATGTTCTCCACATGGTCTTC TCTTCTTTTGGACCTGTTCAGAAGATTGCCATGTTCGACAAAAATGGCGGACTTCAGGCTCTGATTCAGTATCCTGATGTCCAAACTGCTGTTGCAGCAA AAGATGCATTGGAAGGACACTGCATCTACGATGGAGGCTTTTGCAAGCTTCATATTTCATACTCGCGCCATAATGATCTCAGCATAAAGGTCAATAACGA CAGAAGTAGGGACTACACGATCCCCAACACTCCTCCATTGATGAACCCTCAACCTTCGCTCCTTGGACAGCAGCCACCGCAAAATGCAGGCCCCTCTCAC CCGTATGGAGGAAGCCAGTATCCTCCTCCAACAACTGACCATCATTCGATGATGGCCCCACAAACTTCGGCCGGGTGGGGTTCGCCCACAGGCATTCCAC CGGGTGCTCCTATGCACCACCAGCAACCAATGCATAATAATGCATACATGCAGCAGCCCCATCAACACGGAATGATGCATATGCCGCCCCACGGTGGGAT GCCACCAAGCGGTACCATGCCGCACTATCGACCTCCTCAATAG
AA sequence Show only first row Show all	>Lus10014931 pacid=23152765 polypeptide=Lus10014931 locus=Lus10014931.g ID=Lus10014931.BGIv1.0 annot-version=v1.0 MSSVSSQPQFRLTQPPSKVLHLRNLPWECTEEELIELGKPFGRVINTKCNVGANKNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIV NNKTTADVAGNVLLVTIEGADARLVSIDVLHLTKLIALTSYLEHCFMMTETFSYTTVGSLHLLNLLVFSAFGFVHKITTFEKTAGFQALVQFTDTETATS AKNALDGRNIPRYLLPDHVGPCTLRITYSAHTDLSVKFQSHRSRDYTNPNLPVAPSAIDGSGLFAVGIDGKKLEPESNVLLASIENMQYAVTLDVLHMVF SSFGPVQKIAMFDKNGGLQALIQYPDVQTAVAAKDALEGHCIYDGGFCKLHISYSRHNDLSIKVNNDRSRDYTIPNTPPLMNPQPSLLGQQPPQNAGPSH PYGGSQYPPPTTDHHSMMAPQTSAGWGSPTGIPPGAPMHHQQPMHNNAYMQQPHQHGMMHMPPHGGMPPSGTMPHYRPPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Lus10014931 [exp]	0	1
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10010577 [exp]	3.2	0.8978
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003675 [exp]	6.5	0.8969
AT1G27750			nucleic acid binding (.1)		Lus10018694 [exp]	8.1	0.8887
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10032537 [exp]	8.9	0.8839
AT1G48950			C3HC zinc finger-like (.1)		Lus10038947 [exp]	13.2	0.8791
AT4G03220			Protein with RNI-like/FBD-like...		Lus10006970 [exp]	15.7	0.8482
AT1G29350			Kinase-related protein of unkn...		Lus10025382 [exp]	18.8	0.8681
AT1G43770			RING/FYVE/PHD zinc finger supe...		Lus10028603 [exp]	20.4	0.8449
AT1G65440		GTB1	global transcription factor gr...		Lus10011344 [exp]	21.3	0.8783
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10016103 [exp]	23.6	0.8799

Compare expression of checked genes

Lus10014931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.