Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53190 264 / 7e-89 SWEET3, AtSWEET3 Nodulin MtN3 family protein (.1) AT1G21460 173 / 2e-53 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT3G14770 136 / 3e-39 SWEET2, AtSWEET2 Nodulin MtN3 family protein (.1) AT1G66770 136 / 6e-39 SWEET6, AtSWEET6 Nodulin MtN3 family protein (.1) AT4G10850 132 / 2e-37 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT5G40260 129 / 1e-36 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2) AT3G16690 125 / 6e-35 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT5G62850 122 / 7e-34 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT4G15920 120 / 7e-33 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT5G13170 120 / 2e-32 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018932 [exp] 175 / 5e-54 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Lus10028634 [exp] 170 / 3e-52 AT1G21460 359 / 1e-126 Nodulin MtN3 family protein (.1) Lus10038821 [exp] 161 / 2e-50 AT5G53190 101 / 2e-27 Nodulin MtN3 family protein (.1) Lus10011990 [exp] 143 / 6e-42 AT3G14770 268 / 5e-91 Nodulin MtN3 family protein (.1) Lus10005935 [exp] 145 / 9e-42 AT5G50800 235 / 3e-76 Nodulin MtN3 family protein (.1) Lus10040901 [exp] 141 / 3e-40 AT5G13170 236 / 8e-77 senescence-associated gene 29 (.1) Lus10034880 [exp] 133 / 6e-38 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10015245 [exp] 127 / 1e-35 AT3G14770 269 / 3e-91 Nodulin MtN3 family protein (.1) Lus10002364 [exp] 127 / 1e-35 AT5G62850 268 / 7e-91 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G031400 [exp] 323 / 2e-112 AT5G53190 310 / 3e-107 Nodulin MtN3 family protein (.1) Potri.015G021900 [exp] 305 / 4e-105 AT5G53190 286 / 9e-98 Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 178 / 2e-55 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 176 / 1e-54 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072700 [exp] 176 / 1e-54 AT1G21460 345 / 5e-121 Nodulin MtN3 family protein (.1) Potri.002G072800 [exp] 176 / 1e-54 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.001G383000 [exp] 166 / 9e-51 AT3G14770 251 / 1e-84 Nodulin MtN3 family protein (.1) Potri.011G103600 [exp] 156 / 6e-47 AT3G14770 232 / 7e-77 Nodulin MtN3 family protein (.1) Potri.015G074300 [exp] 141 / 4e-41 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Potri.003G143100 [exp] 133 / 9e-38 AT4G10850 262 / 4e-88 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10014932 pacid=23152810 polypeptide=Lus10014932 locus=Lus10014932.g ID=Lus10014932.BGIv1.0 annot-version=v1.0 ATGGGAGACAGATTGCAGCTGGCAGTTGGAATCATGGGTAATGCTGCCTCCTTGTTGCTCTATTCTGCACCCATATTAACGTTCAAGAGGGTCGTGGAGA GGAAAAGTACAGAGGGGTTTTCATGCCTCCCGTATATCATTGCGCTGTTGAACTGCCTTCTTTATACTTGGTACGGACTGCCCGTAGTGAGCTGCGGATG GGAGAACTTCCCGGTGGTCACCATCAACGGTCTGGGGATAATTCTCGAGTTCTCGTTCGTTCTTGCGTATCTTTGGTTTGCTTCGGCGAAAGGAAAGGCA AGATTTTTCAATTTTCCTACGCAAATCATCTTAGCATTCGTCATCATTTCAGCAGTCTCTGCACTTGTGTTGCATGATCATCACATTCGGAAAGTATTCG TCGGAACTGTCGGAGTTGTTGCCTCTGCAGCAATGTATAGCTCCCCACTAGTTGCGATGAAGCAAGTGATGCAGACGAAAAGCGTGGAGTTCATGCCGTT CTACTTGTCACTCTTCTCGTTCCTTGCGAGCTCTCTGTGGCTCGCCTATGGCTTGTTGGGCCATGATTACTTCATAGCATCCCCAAATTTTGTTGGCAGT CCATTGGGGATCCTGCAGCTTGTGGTGTACTTTAGGTACAGAAAGAAAGGGATTGCAGAAGAGCCTACTGCTAACAAGTGGGATCTTGAACAGAATGATG TCATCAAGTCTACCACACAGTTGCAGGTCATGGTTATTGAAGAAGTTAAAGACAAGAACTAA
AA sequence Show only first row Show all	>Lus10014932 pacid=23152810 polypeptide=Lus10014932 locus=Lus10014932.g ID=Lus10014932.BGIv1.0 annot-version=v1.0 MGDRLQLAVGIMGNAASLLLYSAPILTFKRVVERKSTEGFSCLPYIIALLNCLLYTWYGLPVVSCGWENFPVVTINGLGIILEFSFVLAYLWFASAKGKA RFFNFPTQIILAFVIISAVSALVLHDHHIRKVFVGTVGVVASAAMYSSPLVAMKQVMQTKSVEFMPFYLSLFSFLASSLWLAYGLLGHDYFIASPNFVGS PLGILQLVVYFRYRKKGIAEEPTANKWDLEQNDVIKSTTQLQVMVIEEVKDKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53190		SWEET3, AtSWEET...	Nodulin MtN3 family protein (....		Lus10014932 [exp]	0	1
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10022187 [exp]	2.4	0.8236
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	15.6	0.8580
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10032346 [exp]	16.7	0.8482
					Lus10021979 [exp]	18.8	0.7285
AT1G61500			S-locus lectin protein kinase ...		Lus10024081 [exp]	21.5	0.8134
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10039639 [exp]	25.7	0.7760
AT5G23100			Protein of unknown function, D...		Lus10038951 [exp]	28.4	0.7737
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10002435 [exp]	29.0	0.8023
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036942 [exp]	34.2	0.8246
					Lus10042098 [exp]	35.3	0.7948

Compare expression of checked genes

Lus10014932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.