Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24120 250 / 1e-80 ATSIG5, SIG5, SIGE SIGMA FACTOR 5, sigma factor E (.1) AT2G36990 79 / 6e-17 SIG6, SIGF, ATSIG6, SOLDAT8 SIGMA FACTOR 6, RNApolymerase sigma-subunit F (.1) AT1G08540 77 / 2e-16 ATSIG1, SIG1, SIGA, SIG2, SIGB, ABC1, ATSIG2 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) AT1G64860 67 / 1e-12 SIGB, SIG2, SIG1, RPOD1, SIGA RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) AT5G13730 61 / 6e-11 SIGD, SIG4 sigma factor 4 (.1) AT3G53920 57 / 3e-09 SIG3, SIGC SIGMA FACTOR 3, RNApolymerase sigma-subunit C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038823 [exp] 334 / 1e-108 AT5G24120 547 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Lus10001339 [exp] 77 / 4e-16 AT1G08540 520 / 1e-180 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10013642 [exp] 77 / 6e-16 AT1G08540 498 / 4e-172 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10020325 [exp] 71 / 4e-14 AT1G08540 534 / 0.0 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10009541 [exp] 71 / 5e-14 AT1G64860 438 / 2e-147 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Lus10020365 [exp] 70 / 7e-14 AT1G64860 346 / 7e-115 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Lus10005668 [exp] 68 / 4e-13 AT1G08540 425 / 2e-143 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G031100 [exp] 259 / 6e-84 AT5G24120 584 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Potri.015G022100 [exp] 257 / 2e-83 AT5G24120 605 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Potri.019G044200 [exp] 82 / 9e-18 AT1G08540 588 / 0.0 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Potri.013G070500 [exp] 77 / 3e-16 AT1G08540 558 / 0.0 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Potri.006G125700 [exp] 76 / 7e-16 AT2G36990 615 / 0.0 SIGMA FACTOR 6, RNApolymerase sigma-subunit F (.1) Potri.013G075400 [exp] 72 / 1e-14 AT1G64860 680 / 0.0 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Potri.019G043300 [exp] 70 / 7e-14 AT1G64860 679 / 0.0 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Potri.009G057200 [exp] 62 / 4e-11 AT5G13730 303 / 2e-99 sigma factor 4 (.1) Potri.006G234400 [exp] 60 / 2e-10 AT3G53920 417 / 5e-140 SIGMA FACTOR 3, RNApolymerase sigma-subunit C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04542 [flax] [poplar] Sigma70_r2 Sigma-70 region 2 CL0123 [flax] [poplar] HTH PF04545 [flax] [poplar] Sigma70_r4 Sigma-70, region 4
Representative CDS sequence Show only first row Show all	>Lus10014934 pacid=23152792 polypeptide=Lus10014934 locus=Lus10014934.g ID=Lus10014934.BGIv1.0 annot-version=v1.0 ATGGCTAGCTTGGACTGGAAGAAGATGAAGATCCCTCCTGTTCTTACTTCTTCAGAGCACACCTGGCTGTTCAATCTGATGCAGCCTATGCAGGCTGTAA TGCAGCTTAAAGATGAGCTGCAGAAGACAATGGGGAAGGTTCCAACCGACGTTCAGTTAGCAGAAGCTGCGAATTCGACTGTTTTCGAGATAAGGAGAAC GTTGGAGACCGGCCAGGCTGCAAGGAACAAGCTCATTAAGCACAACCTGAGGTTGGTGTTGTTCGTCATCAACAAGTACTTCTCGGACTTTGCGAACAGC TCGAGGTTTCAAGACCTGTGCCAGGCCGGAGCGCAGGGGCTGATCACTGCAATTGACCGCTTTGAACCCAAGAGGAAGTTGAAGCTATCTACATACGGCC TGTTCTGGATTAGGCACTCGATAATTCGATCCATGACCGTGTCGAGCTTTATCCATGTCCCGTTTGGACTCGAATCGCTGGACTCGCTGAAGCCGAAGGA GAGCTTGGTGATCAGGCAAAGATACGGGCTTGATGGCAAAGGCGACCGGTCGCTGAGCGAGATCGCTGCCAACTTGAACATCTCGAGAGAAATGGTTCGT AAGCATGAGGTCAAGGCTCTCATGAAGCTCAAACACCCTGCTCGAGTTGATCACCTTCGCCAATATGTCGTCTGA
AA sequence Show only first row Show all	>Lus10014934 pacid=23152792 polypeptide=Lus10014934 locus=Lus10014934.g ID=Lus10014934.BGIv1.0 annot-version=v1.0 MASLDWKKMKIPPVLTSSEHTWLFNLMQPMQAVMQLKDELQKTMGKVPTDVQLAEAANSTVFEIRRTLETGQAARNKLIKHNLRLVLFVINKYFSDFANS SRFQDLCQAGAQGLITAIDRFEPKRKLKLSTYGLFWIRHSIIRSMTVSSFIHVPFGLESLDSLKPKESLVIRQRYGLDGKGDRSLSEIAANLNISREMVR KHEVKALMKLKHPARVDHLRQYVV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10014934 [exp]	0	1
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	1.0	0.9729
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	1.4	0.9515
AT2G35490			Plastid-lipid associated prote...		Lus10030987 [exp]	1.7	0.9444
					Lus10017075 [exp]	3.5	0.9244
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10007586 [exp]	3.9	0.9237
AT1G50250		FTSH1	FTSH protease 1 (.1)		Lus10012277 [exp]	4.2	0.9211
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10042424 [exp]	4.9	0.9183
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10040246 [exp]	5.0	0.8983
AT3G56140			Protein of unknown function (D...		Lus10010224 [exp]	6.9	0.9057
AT5G24850		CRY3	cryptochrome 3 (.1)		Lus10033499 [exp]	7.7	0.9023

Compare expression of checked genes

Lus10014934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.