Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 78 / 2e-15 F-box family protein (.1) AT3G08750 64 / 5e-11 F-box and associated interaction domains-containing protein (.1) AT3G10430 60 / 1e-09 F-box and associated interaction domains-containing protein (.1) AT3G17480 59 / 2e-09 F-box and associated interaction domains-containing protein (.1) AT3G23880 57 / 8e-09 F-box and associated interaction domains-containing protein (.1) AT3G49980 56 / 2e-08 F-box and associated interaction domains-containing protein (.1) AT2G17830 53 / 2e-07 F-box and associated interaction domains-containing protein (.1) AT3G22421 53 / 2e-07 F-box and associated interaction domains-containing protein (.1) AT2G04920 52 / 4e-07 F-box and associated interaction domains-containing protein (.1) AT4G12560 52 / 5e-07 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014937 [exp] 317 / 1e-106 AT3G06240 79 / 4e-16 F-box family protein (.1) Lus10018008 [exp] 286 / 4e-93 AT3G16210 82 / 6e-17 F-box family protein (.1) Lus10009424 [exp] 135 / 3e-35 AT3G06240 73 / 9e-14 F-box family protein (.1) Lus10001105 [exp] 108 / 1e-25 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10028961 [exp] 105 / 1e-24 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10029725 [exp] 96 / 2e-21 AT3G06240 74 / 3e-14 F-box family protein (.1) Lus10018095 [exp] 89 / 7e-19 ND 49 / 4e-06 Lus10027824 [exp] 82 / 1e-16 AT3G06240 78 / 2e-15 F-box family protein (.1) Lus10023372 [exp] 81 / 2e-16 AT3G16210 67 / 5e-12 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G058000 [exp] 86 / 3e-18 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.010G207500 [exp] 84 / 2e-17 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318300 [exp] 83 / 2e-17 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.001G318400 [exp] 78 / 1e-15 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.011G137200 [exp] 77 / 5e-15 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.017G058900 [exp] 75 / 1e-14 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.017G012200 [exp] 71 / 4e-13 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.002G223000 [exp] 71 / 4e-13 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.011G121200 [exp] 70 / 7e-13 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.014G162600 [exp] 69 / 1e-12 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Lus10014935 pacid=23152780 polypeptide=Lus10014935 locus=Lus10014935.g ID=Lus10014935.BGIv1.0 annot-version=v1.0 ATGGACCCGCCGCAACGTCGGCCGCGACGTGATAATTACTACCTCCCGCAAGAACTCATCGCCGACATCTTGCCAAGGCTCCCCACCGCCGCAGCCGCCG TCAGGTTCCGCTGCGTTTGCAAATCATGGAGCCGACTGCTCTCCGACGGTAAGTTTATCTACCGCCACCTATTTTCCGGCGACGGTGAAGCCCCCCCAAT AGTTATGATCACGCAAAACTTGCGCAGGGAGGTATTTTCAAGCAGTTTATATTACTCTTTGCTCTCCCACCACACACTCCTCCCCAAAACGACACCGTAT GACAACCGCGAAGGTTTGCCTTATGAACTTGTACCCAACCGCTGCCTCAACACTGTTTTTTCCGATTGCCGCGTGGAAATCGTTGGCTGGTGCAACGGCT TATTCTGCACTGCCGAGAGCATCCGGGGGTGGGTAACTCAGCTGATTCTTTGGAACCCCTCAACTTTAGAGATTAAGCACTTGCCATGGATCAATGACTC GGAGCAGATCGGTTTTGGGTTCGATTCGAGGACCGGAGACTATAAAGTCGTGGCAATTTCTAACTCAACGTCGTCTCCTTGTGCCATTCAGATTTATAGC TTGAAGAATGATTTGTGGAGTGCAATATTAGTCAACGCAGAGGAGCAAAATATTGGACAACAAAATCGACGTTTCAACGAGTTCGCTACGATGCATAATA ATAAATTGTCGAGCTATGGAAAAATCTATTGGTACAATGCTTACTTGATTAACAACTACATTACTTGCTTTGACATTAGGGAGGAAAGATTTAGCCATCA AAGTTTTCCGAACGCCCTTACCGAAAGAGTTGTTCATGTTCCTCCCGAGTCAGAGTGTCGTGAACTATTGCATTTAGCAACCACGCCCAAGGAAGATTCT CTGATGGCCGTATTTCAATTTGACAACAATAAGGATAACTTTGAGATTTGGGGGTTGTTGCGGTTCCACAGTGCAGAGTCTTGGGTCAAGTTGTTTCATT GTGACGGGAGTCGTCGAATTTTGGGTTCGATTGGCATAGCTAACGTGATTGGGGTTGCTGGTAATGGGAAGTATGTTCTCATCAAGGAAAATGGAGAATT ATTTAGATTCAACTTCGAGAAAGAAGAAATTACTTGTTACAATAGAATTCGAGTCGTGCGTGATCGTGATCGAACAATCAATTATAGATTCAAGGCGTAT TGTTACGTCCCATCTCAAGTATCATTATATTGA
AA sequence Show only first row Show all	>Lus10014935 pacid=23152780 polypeptide=Lus10014935 locus=Lus10014935.g ID=Lus10014935.BGIv1.0 annot-version=v1.0 MDPPQRRPRRDNYYLPQELIADILPRLPTAAAAVRFRCVCKSWSRLLSDGKFIYRHLFSGDGEAPPIVMITQNLRREVFSSSLYYSLLSHHTLLPKTTPY DNREGLPYELVPNRCLNTVFSDCRVEIVGWCNGLFCTAESIRGWVTQLILWNPSTLEIKHLPWINDSEQIGFGFDSRTGDYKVVAISNSTSSPCAIQIYS LKNDLWSAILVNAEEQNIGQQNRRFNEFATMHNNKLSSYGKIYWYNAYLINNYITCFDIREERFSHQSFPNALTERVVHVPPESECRELLHLATTPKEDS LMAVFQFDNNKDNFEIWGLLRFHSAESWVKLFHCDGSRRILGSIGIANVIGVAGNGKYVLIKENGELFRFNFEKEEITCYNRIRVVRDRDRTINYRFKAY CYVPSQVSLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10014935 [exp]	0	1
AT1G55800			Domain of unknown function (DU...		Lus10016346 [exp]	5.7	0.7262
AT5G03100			F-box/RNI-like superfamily pro...		Lus10029953 [exp]	18.7	0.6049
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10039839 [exp]	19.7	0.6049
					Lus10026868 [exp]	31.1	0.5775
					Lus10027332 [exp]	32.6	0.5770
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005015 [exp]	42.2	0.5573
					Lus10012623 [exp]	42.7	0.5380
AT4G36210			Protein of unknown function (D...		Lus10033181 [exp]	44.0	0.5545
AT1G17630			Pentatricopeptide repeat (PPR-...		Lus10002512 [exp]	56.7	0.5907
					Lus10013260 [exp]	61.3	0.5352

Compare expression of checked genes

Lus10014935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.